Multi-Omics Factor Analysis
☆269Sep 30, 2020Updated 6 years ago
Alternatives and similar repositories for MOFA
Users that are interested in MOFA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-Omics Factor Analysis☆427Sep 10, 2026Updated last month
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆52Jul 6, 2023Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆101Nov 24, 2020Updated 5 years ago
- List of software packages for multi-omics analysis☆947Aug 4, 2026Updated 2 months ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆149Apr 5, 2024Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆232Jul 2, 2026Updated 3 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆49May 3, 2019Updated 7 years ago
- ☆20May 20, 2021Updated 5 years ago
- ☆65Mar 18, 2025Updated last year
- PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.☆560Mar 4, 2026Updated 7 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- ☆97Apr 18, 2024Updated 2 years ago
- Fast Gene Set Enrichment Analysis☆459Sep 22, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 5 months ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Mar 7, 2018Updated 8 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆31Apr 28, 2026Updated 5 months ago
- chromatin Variability Across Regions (of the genome!)☆197May 1, 2026Updated 5 months ago
- Single-cell RNA-seq Gene Expression Recovery☆116Nov 28, 2024Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Jun 14, 2026Updated 4 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Jun 5, 2026Updated 4 months ago
- Integrative clustering for heterogeneous biomedical datasets.☆16May 4, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆30May 15, 2024Updated 2 years ago
- Multi-omics factor analysis v2☆70Sep 4, 2026Updated last month
- Single-cell Hierarchical Poisson Factorization☆76Feb 14, 2026Updated 8 months ago
- Visualise Clusterings at Different Resolutions☆262Jun 21, 2025Updated last year
- Benchmarking computational single cell ATAC-seq methods☆186Nov 30, 2020Updated 5 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,872Oct 5, 2026Updated last week
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- scRNA-seq cell type identification☆45Oct 3, 2019Updated 7 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 4 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆185Dec 18, 2021Updated 4 years ago
- scNMT-seq gastrulation☆44Feb 8, 2023Updated 3 years ago
- Batch balanced KNN☆180Oct 11, 2023Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,708Updated this week