Multi-Omics Factor Analysis
☆259Sep 30, 2020Updated 5 years ago
Alternatives and similar repositories for MOFA
Users that are interested in MOFA are comparing it to the libraries listed below
Sorting:
- Multi-Omics Factor Analysis☆384Feb 23, 2026Updated last week
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆144Apr 5, 2024Updated last year
- ☆64Mar 18, 2025Updated 11 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆51Jul 6, 2023Updated 2 years ago
- Fast Gene Set Enrichment Analysis☆433Jan 2, 2026Updated 2 months ago
- List of software packages for multi-omics analysis☆894Jan 28, 2026Updated last month
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆49May 3, 2019Updated 6 years ago
- ☆20May 20, 2021Updated 4 years ago
- PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.☆536Jan 26, 2026Updated last month
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 5 months ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- ☆29Feb 1, 2023Updated 3 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Mar 7, 2018Updated 7 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- ☆96Apr 18, 2024Updated last year
- Subpopulation detection in high-dimensional single-cell data☆141Oct 22, 2020Updated 5 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago
- Bioconductor package for management of multi-assay data☆73Nov 17, 2025Updated 3 months ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated last month
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,573Updated this week
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Nov 17, 2025Updated 3 months ago
- A Python package for gene network analysis☆32Jun 22, 2022Updated 3 years ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Automate package and project setup for Bioconductor packages☆54Mar 21, 2025Updated 11 months ago
- Deep count autoencoder for denoising scRNA-seq data☆269Mar 21, 2024Updated last year
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,668Updated this week
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Jul 31, 2019Updated 6 years ago
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated last month
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago