bioFAM / MOFALinks
Multi-Omics Factor Analysis
☆249Updated 4 years ago
Alternatives and similar repositories for MOFA
Users that are interested in MOFA are comparing it to the libraries listed below
Sorting:
- ☆141Updated 7 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆188Updated 4 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 2 years ago
- Cell types enrichment analysis☆198Updated last year
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- Simple simulation of single-cell RNA sequencing data☆230Updated 2 weeks ago
- Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…☆115Updated this week
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆292Updated last month
- R package for analyzing single-cell RNA-seq data☆175Updated last year
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆236Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆289Updated 2 years ago
- Multi-Omics Factor Analysis☆346Updated last year
- Comparison of methods for trajectory inference on single-cell data 🥇☆213Updated 2 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆330Updated this week
- Tools and methods for analysis of single cell assay data in R☆249Updated last year
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆128Updated 4 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆204Updated 2 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆141Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆234Updated last week
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- ☆93Updated 4 years ago
- Panoramic stitching of single cell data☆287Updated last month
- my notes for scATACseq analysis☆131Updated last year