bioFAM / MOFALinks
Multi-Omics Factor Analysis
☆253Updated 5 years ago
Alternatives and similar repositories for MOFA
Users that are interested in MOFA are comparing it to the libraries listed below
Sorting:
- ☆143Updated 7 years ago
- Cell types enrichment analysis☆205Updated last year
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 2 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆199Updated 5 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆194Updated 2 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Simple simulation of single-cell RNA sequencing data☆233Updated 2 weeks ago
- R package for analyzing single-cell RNA-seq data☆177Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆303Updated 2 months ago
- Bench-marking classification tools for scRNA-seq data☆189Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆297Updated 2 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆218Updated 2 years ago
- Interactively analyze single cell genomic data☆185Updated 3 months ago
- my notes for scATACseq analysis☆132Updated last year
- Multi-Omics Factor Analysis☆367Updated last week
- chromatin Variability Across Regions (of the genome!)☆184Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆209Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆258Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆217Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…☆124Updated last week
- ☆118Updated 7 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆214Updated last week
- Updated implementation of the GSEA-P R application for modern R distributions☆99Updated 4 years ago
- Benchmarking computational single cell ATAC-seq methods☆185Updated 5 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆243Updated 6 months ago
- ☆291Updated 3 years ago