List of software packages for multi-omics analysis
☆943Aug 4, 2026Updated last month
Alternatives and similar repositories for awesome-multi-omics
Users that are interested in awesome-multi-omics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,850Updated this week
- scRNAseq analysis notes from Ming Tang☆833Dec 2, 2024Updated last year
- Multi-Omics Factor Analysis☆269Sep 30, 2020Updated 5 years ago
- Multi-Omics Factor Analysis☆421Aug 26, 2026Updated last week
- Unix, R and python tools for genomics and data science☆1,404Aug 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- Formalizing and benchmarking open problems in single-cell genomics☆437Aug 18, 2026Updated 2 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆344Updated this week
- Fast Gene Set Enrichment Analysis☆458Jun 27, 2026Updated 2 months ago
- A list of scRNA-seq analysis tools☆814Jul 29, 2026Updated last month
- ChIP-seq analysis notes from Ming Tang☆855Aug 5, 2024Updated 2 years ago
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆365Feb 26, 2026Updated 6 months ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,591Dec 11, 2022Updated 3 years ago
- A list of interesting genome browser and genome visualization programs☆1,103Jul 21, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TRAjectory-based Differential Expression analysis for SEQuencing data☆312Jun 17, 2025Updated last year
- A curated list of awesome Bioinformatics libraries and software.☆4,271Apr 7, 2026Updated 5 months ago
- Simplify functional enrichment results☆128Jan 30, 2026Updated 7 months ago
- ☆67Nov 14, 2023Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆304Dec 16, 2025Updated 8 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆168Jun 14, 2026Updated 2 months ago
- Spatial omics analysis toolbox☆388Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,683Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell analysis in Python. Scales to >100M cells.☆2,554Updated this week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆245Mar 2, 2026Updated 6 months ago
- RNAseq analysis notes from Ming Tang☆1,097Nov 15, 2021Updated 4 years ago
- A list of useful bioinformatics resources☆640May 4, 2026Updated 4 months ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆338May 18, 2026Updated 3 months ago
- A list of deep learning implementations in biology☆2,157Aug 3, 2026Updated last month
- Graph-linked unified embedding for single-cell multi-omics data integration☆477Feb 9, 2026Updated 6 months ago
- Draw heatmap simply using a tidy data frame☆364Feb 7, 2026Updated 7 months ago
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆182Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆443Aug 12, 2026Updated 3 weeks ago
- https://www.sc-best-practices.org☆1,261Aug 29, 2026Updated last week
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆603Aug 13, 2024Updated 2 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆509Jul 26, 2026Updated last month
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆144Oct 28, 2025Updated 10 months ago