mikelove / awesome-multi-omics

Related projects ⓘ

Alternatives and complementary repositories for awesome-multi-omics

• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆635Updated this week
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆672Updated 2 years ago
• hbctraining / DGE_workshop
  ☆374Updated 2 years ago
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆566Updated last week
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆939Updated 3 years ago
• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆779Updated 2 weeks ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆752Updated 3 months ago
• hbctraining / scRNA-seq_online
  ☆524Updated 3 weeks ago
• hbctraining / scRNA-seq
  ☆535Updated 3 years ago
• pachterlab / BI-BE-CS-183-2023
  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
  ☆448Updated 10 months ago
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆247Updated last month
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆459Updated 2 weeks ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆455Updated 4 years ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆362Updated this week
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆551Updated 3 months ago
• immunogenomics / harmony
  Fast, sensitive and accurate integration of single-cell data with Harmony
  ☆528Updated last week
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆313Updated last week
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,024Updated last week
• crazyhottommy / scRNAseq-analysis-notes
  scRNAseq analysis notes from Ming Tang
  ☆646Updated last month
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆435Updated last week
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆407Updated 3 weeks ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆487Updated 2 months ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆438Updated 4 years ago
• ctlab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆379Updated last month
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆773Updated 4 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆389Updated 4 months ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆567Updated this week
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆549Updated 3 weeks ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆413Updated 7 years ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆836Updated last year