List of software packages for multi-omics analysis
☆898Jan 28, 2026Updated last month
Alternatives and similar repositories for awesome-multi-omics
Users that are interested in awesome-multi-omics are comparing it to the libraries listed below
Sorting:
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,668Mar 1, 2026Updated last week
- scRNAseq analysis notes from Ming Tang☆786Dec 2, 2024Updated last year
- Unix, R and python tools for genomics and data science☆1,372Aug 25, 2025Updated 6 months ago
- Multi-Omics Factor Analysis☆384Feb 23, 2026Updated last week
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,553Dec 11, 2022Updated 3 years ago
- A list of scRNA-seq analysis tools☆775Feb 5, 2026Updated last month
- Table of software for the analysis of single-cell RNA-seq data.☆338Updated this week
- Fast Gene Set Enrichment Analysis☆433Jan 2, 2026Updated 2 months ago
- Multi-Omics Factor Analysis☆259Sep 30, 2020Updated 5 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆421Sep 4, 2025Updated 6 months ago
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆355Feb 26, 2026Updated last week
- Formalizing and benchmarking open problems in single-cell genomics☆420Nov 26, 2025Updated 3 months ago
- ChIP-seq analysis notes from Ming Tang☆842Aug 5, 2024Updated last year
- A list of interesting genome browser and genome visualization programs☆1,051Feb 25, 2026Updated last week
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated last month
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆323Mar 6, 2025Updated last year
- A curated list of awesome Bioinformatics libraries and software.☆3,882Feb 28, 2026Updated last week
- A tool to find sequencing data and metadata from public databases.☆596Aug 13, 2024Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,573Updated this week
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 5 months ago
- Reference mapping for single-cell genomics☆400Dec 2, 2025Updated 3 months ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- https://www.sc-best-practices.org☆1,157Updated this week
- Spatial omics analysis toolbox☆362Feb 12, 2026Updated 3 weeks ago
- Draw heatmap simply using a tidy data frame☆357Feb 7, 2026Updated last month
- Single-cell analysis in Python. Scales to >100M cells.☆2,362Updated this week
- A list of useful bioinformatics resources☆625Apr 29, 2025Updated 10 months ago
- RNAseq analysis notes from Ming Tang☆1,069Nov 15, 2021Updated 4 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆220Aug 30, 2023Updated 2 years ago
- A list of deep learning implementations in biology☆2,123Updated this week
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 2 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆303Mar 6, 2023Updated 3 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆218Updated this week
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆176Nov 12, 2025Updated 3 months ago
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆142Oct 28, 2025Updated 4 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,100Mar 1, 2026Updated last week
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month