Graylab / CAPSIFLinks
CArbohydrate-Protein Site IdentiFier
☆14Updated 2 years ago
Alternatives and similar repositories for CAPSIF
Users that are interested in CAPSIF are comparing it to the libraries listed below
Sorting:
- Modelling protein conformational landscape with Alphafold☆54Updated 5 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 11 months ago
- ☆47Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 7 months ago
- Explicit crosslinks in AlphaFold 3☆23Updated 10 months ago
- Code for deep learning guided design of dynamic proteins☆32Updated last year
- ☆26Updated 5 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Updated 2 years ago
- ☆15Updated 10 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 weeks ago
- ☆13Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61Updated 8 months ago
- Generative diverse protein backbones by protein language model☆34Updated 3 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆51Updated last week
- T-ALPHA: a hierarchical transformer-based deep neural network for protein-ligand binding affinity prediction with uncertainty-aware self-…☆30Updated 11 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆37Updated 10 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆47Updated 3 months ago
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 6 years ago
- A Python framework for the rapid modeling of glycans☆18Updated 3 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆41Updated 7 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Updated last year
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆55Updated 7 months ago
- Efficient manipulation of protein structures in Python☆61Updated 4 months ago
- Small_molecule_binder_design_use_pseudocycles☆23Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43Updated last year
- Metrics for our protein design competitions.☆35Updated last year
- Analysis of alphafold and colabfold results☆34Updated last month
- ☆27Updated last month
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 3 months ago