RRShieldsCutler / splinectomeRLinks
R package version of the splinectomy longitudinal statistical analysis tools
☆17Updated 3 years ago
Alternatives and similar repositories for splinectomeR
Users that are interested in splinectomeR are comparing it to the libraries listed below
Sorting:
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ☆81Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Updated 5 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆67Updated this week
- gutSMASH☆57Updated 4 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Updated 6 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆38Updated last week
- ☆63Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Updated 9 months ago
- ☆18Updated 3 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- GraftM - Rapid community profiles from metagenomes☆48Updated 3 months ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44Updated last year
- ☆42Updated 4 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated 2 weeks ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- ☆45Updated 2 years ago