RRShieldsCutler / splinectomeR
R package version of the splinectomy longitudinal statistical analysis tools
☆17Updated 3 years ago
Alternatives and similar repositories for splinectomeR:
Users that are interested in splinectomeR are comparing it to the libraries listed below
- Analyses in R and Python Using curatedMetagenomicData☆31Updated last month
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆32Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last week
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- ☆20Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- ☆50Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- StrainFinder☆27Updated 6 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆35Updated last month
- Metagenomic Estimation of Dietary Intake and Content.☆29Updated 3 weeks ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- gutSMASH☆53Updated 4 months ago
- ☆45Updated last year
- ☆29Updated 4 months ago
- ☆41Updated 4 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- KEGG Module Evaluation Tool☆29Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- A toolkit for prokaryotic comparative genomics☆48Updated 3 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 6 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 2 months ago