RRShieldsCutler / splinectomeRLinks
R package version of the splinectomy longitudinal statistical analysis tools
☆17Updated 3 years ago
Alternatives and similar repositories for splinectomeR
Users that are interested in splinectomeR are comparing it to the libraries listed below
Sorting:
- Vanilla regression methods for microbiome differential abundance analysis☆58Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆86Updated 11 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- ☆72Updated last week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆32Updated last month
- Analyses in R and Python Using curatedMetagenomicData☆32Updated 3 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ☆56Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆38Updated 3 weeks ago
- ☆17Updated 2 years ago
- ☆52Updated 3 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆32Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆76Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- StrainFinder☆28Updated 7 years ago
- ☆41Updated 4 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆41Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Metagenomic Estimation of Dietary Intake and Content.☆30Updated 3 months ago
- gutSMASH☆55Updated 7 months ago