melbintgen / deep-learning-for-scRNAseqView external linksLinks
☆11Oct 6, 2025Updated 4 months ago
Alternatives and similar repositories for deep-learning-for-scRNAseq
Users that are interested in deep-learning-for-scRNAseq are comparing it to the libraries listed below
Sorting:
- An automated workflow for processing ddRADseq data using Stacks v2.4. Starts with sequencer files, and ends with various input files for …☆10Apr 25, 2024Updated last year
- A tool for visualising kmers in 2D space.☆12Feb 23, 2025Updated 11 months ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 10 years ago
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆12Mar 6, 2018Updated 7 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- The practical material from the course Biotech 7005: Bioinformatics and Systems Modelling☆18Oct 28, 2019Updated 6 years ago
- ☆20Oct 16, 2024Updated last year
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated 11 months ago
- The PanGenome Graph Builder☆16Jul 17, 2024Updated last year
- Repository of codes and notebooks used during the 2024 UQ-Bio Summer School.☆14May 16, 2025Updated 8 months ago
- Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of m…☆23Feb 5, 2024Updated 2 years ago
- A multimodal model bridging vision and genomics for biodiversity monitoring at scale.☆16Sep 18, 2025Updated 4 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- ☆17Jan 11, 2026Updated last month
- Jailbreak Evo☆20Jun 2, 2025Updated 8 months ago
- The BV-BRC Command Line Interface☆17Aug 6, 2025Updated 6 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Dec 2, 2022Updated 3 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- A Hierarchical Softmax Framework for PyTorch☆22Jul 10, 2025Updated 7 months ago
- R package version of the splinectomy longitudinal statistical analysis tools☆17Apr 21, 2022Updated 3 years ago
- An introductory workshop to protein language models☆17May 24, 2022Updated 3 years ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆26Nov 26, 2025Updated 2 months ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆21Feb 21, 2025Updated 11 months ago
- ☆29Sep 4, 2025Updated 5 months ago
- asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models☆20Nov 8, 2025Updated 3 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 2 years ago
- Free software for research of super-resolution imaging.☆32Apr 8, 2025Updated 10 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 6 months ago
- Practical Haplotype Graph (PHG) version 2☆30Feb 6, 2026Updated last week
- Metagenomic Analysis in Real Time☆29Nov 18, 2025Updated 2 months ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Jun 11, 2024Updated last year
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Sep 4, 2025Updated 5 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Sep 27, 2019Updated 6 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Jan 15, 2026Updated 3 weeks ago
- Technical analysis, historical analysis, price simulation using random walk & monte carlo, visualizations using ggplot and plotly☆28Aug 21, 2018Updated 7 years ago
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated 9 months ago
- Predicting molecular structure from Infrared (IR) Spectra☆29Jun 6, 2024Updated last year