chasewnelson / EBTLinks
Evolutionary Bioinformatics Toolkit (EBT)
☆11Updated 5 years ago
Alternatives and similar repositories for EBT
Users that are interested in EBT are comparing it to the libraries listed below
Sorting:
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆64Updated 3 months ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 2 weeks ago
- Visualize whole genome alignments as linear maps☆74Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆33Updated 4 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- ☆29Updated 4 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago