chasewnelson / EBTLinks
Evolutionary Bioinformatics Toolkit (EBT)
☆11Updated 4 years ago
Alternatives and similar repositories for EBT
Users that are interested in EBT are comparing it to the libraries listed below
Sorting:
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- AUGUSTUS v3.2.1 for installation on Mac OS X☆11Updated 7 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆20Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- viralComplete: BLAST-based viral completeness verification☆25Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- This is the Haplotypo repository☆20Updated last year
- ULTRA Locates Tandemly Repetitive Areas☆28Updated last month
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 4 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆26Updated 3 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago