Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
☆23Apr 11, 2019Updated 6 years ago
Alternatives and similar repositories for XYalign
Users that are interested in XYalign are comparing it to the libraries listed below
Sorting:
- ☆29Jul 10, 2019Updated 6 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- Gene Exploration System for Variance☆22Dec 8, 2022Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Aug 29, 2017Updated 8 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads☆15Apr 30, 2019Updated 6 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Population-scale genotyping using pangenome graphs☆196Jan 9, 2025Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 5 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 8 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆39Dec 15, 2025Updated 3 months ago
- A toolkit for automated local phylogenomic analyses, or ALPHA☆12Oct 23, 2019Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Nov 14, 2022Updated 3 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago