PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics
☆19May 8, 2024Updated last year
Alternatives and similar repositories for phoenix
Users that are interested in phoenix are comparing it to the libraries listed below
Sorting:
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Oct 20, 2025Updated 4 months ago
- ☆14Aug 5, 2022Updated 3 years ago
- ☆11Oct 20, 2024Updated last year
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 2 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 6 years ago
- A python package for calculating local cell specific networks☆17Nov 17, 2023Updated 2 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- Website☆16Aug 30, 2025Updated 6 months ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 2 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Feb 20, 2026Updated last week
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 9 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Oct 15, 2020Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- ☆28Jul 18, 2024Updated last year
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- ☆30Jul 10, 2025Updated 7 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆35Aug 28, 2020Updated 5 years ago
- Redraw base graphics as grid graphics☆35Updated this week
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Mar 20, 2018Updated 7 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31May 20, 2025Updated 9 months ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Dec 23, 2021Updated 4 years ago
- A model named ATMOL for predicting molecular property☆10May 2, 2022Updated 3 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Jan 12, 2024Updated 2 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last week
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- Computational Analysis of Gene Expression Evolution☆45Aug 19, 2025Updated 6 months ago
- Calculate distances between phylogenetic trees in R☆35Feb 19, 2026Updated last week
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Beiwe is a smartphone-based digital phenotyping research platform. This repository contains some data analysis code.☆14Feb 10, 2020Updated 6 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 2 months ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- [KDD'22] Partial Label Learning with Discrimination Augmentation☆10May 21, 2024Updated last year