Alternatives and similar repositories for laava

Users that are interested in laava are comparing it to the libraries listed below

• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated 8 months ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• ENCODE-DCC / croo
  Cromwell output organizer
  ☆13Updated 4 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated 3 weeks ago
• mcfrith / dnarrange
  ☆16Updated 5 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 3 weeks ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆31Updated 2 months ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 5 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 4 months ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆26Updated 4 months ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• HKU-BAL / Clair3-Trio
  Clair3-Trio: variant calling in trio using Nanopore long-reads
  ☆15Updated last year
• nch-igm / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆19Updated 2 weeks ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆12Updated 4 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• srbehera / DRAGEN_Analysis
  ☆32Updated last year
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• pachterlab / fastQpick
  ☆26Updated 4 months ago
• daihang16 / nubeamdedup
  Removing PCR duplicates for sequencing reads.
  ☆14Updated 4 years ago
• ExpressionAnalysis / HLAProfiler
  Using k-mers to call HLA alleles in RNA sequencing data
  ☆22Updated 6 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆28Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 3 weeks ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆23Updated 2 months ago