☆200Jun 20, 2023Updated 3 years ago
Alternatives and similar repositories for loftee
Users that are interested in loftee are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆70Updated this week
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆170Updated this week
- List of gene lists for genomic analyses.☆229Jun 24, 2022Updated 4 years ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆565Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Hail helper functions for the gnomAD project and Translational Genomics Group☆101Jun 29, 2026Updated 3 weeks ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- Cloud-native genomic dataframes and batch computing☆1,070Updated this week
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- a lightweight db framework for exploring genetic variation.☆328Apr 28, 2020Updated 6 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆130Feb 13, 2020Updated 6 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- A Tool to Annotate and Prioritize Exome Variants☆260Jul 13, 2026Updated last week
- web-based analysis tool for rare disease genomics☆212Updated this week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆93Oct 30, 2025Updated 8 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆90Jul 13, 2026Updated last week
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆43Nov 21, 2022Updated 3 years ago
- Annotates variants in MAF with OncoKB annotation.☆146Jun 25, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆682Mar 20, 2026Updated 4 months ago
- A flexible framework for rapid genome analysis and interpretation☆320Oct 18, 2022Updated 3 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆211May 28, 2023Updated 3 years ago
- RUFUS k-mer based genomic variant detection☆55Jan 5, 2026Updated 6 months ago
- genetic variant expressions, annotation, and filtering for great good.☆276May 12, 2026Updated 2 months ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- ☆13May 2, 2018Updated 8 years ago
- ☆12Nov 1, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Ensembl tools☆34Nov 3, 2025Updated 8 months ago
- Website to analyze conflicting assertions in ClinVar☆20Mar 16, 2026Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- ☆27Aug 8, 2024Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Structural variation and indel detection by local assembly☆256Jul 15, 2026Updated last week