konradjk / lofteeLinks
☆188Updated 2 years ago
Alternatives and similar repositories for loftee
Users that are interested in loftee are comparing it to the libraries listed below
Sorting:
- Software program for checking sample matching for NGS data☆137Updated last year
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆162Updated 5 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Copy number calling and variant classification using targeted short read sequencing☆141Updated 4 months ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆163Updated this week
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆195Updated last year
- GWAS Pipeline for H3Africa☆114Updated 8 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- Annotates variants in MAF with OncoKB annotation.☆139Updated last week
- MuTect -- Accurate and sensitive cancer mutation detection☆102Updated 2 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆178Updated last year
- A tool set for short variant discovery in genetic sequence data.☆204Updated 4 years ago
- The nimble & robust variant annotator☆190Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 3 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆159Updated 3 weeks ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- Learning the Variant Call Format☆147Updated 5 months ago
- ☆82Updated 7 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- Hail helper functions for the gnomAD project and Translational Genomics Group☆98Updated this week
- Precision HLA typing from next-generation sequencing data☆205Updated last year