diskin-lab-chop / AutoGVPLinks
☆24Updated this week
Alternatives and similar repositories for AutoGVP
Users that are interested in AutoGVP are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- Universal RObust Peak Annotator☆16Updated 2 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- ☆40Updated 6 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated last year
- Burden testing against public controls☆50Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Sanity check Variant Call Format (VCF) files.☆37Updated 9 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes,…☆10Updated 5 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ☆26Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated 3 months ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- Generic human DNA variant annotation pipeline☆59Updated last year
- Gene Fusion Visualiser☆51Updated 3 years ago
- A tool for timing complex copy number gains in cancer.☆19Updated last month
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Updated 4 months ago