☆24Feb 23, 2026Updated last week
Alternatives and similar repositories for AutoGVP
Users that are interested in AutoGVP are comparing it to the libraries listed below
Sorting:
- An information model for representing variant annotations.☆27Updated this week
- ☆10Aug 13, 2025Updated 6 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- REEV: Explanation and Evaluation of Variants☆11Feb 23, 2026Updated last week
- A pipeline creation tool using Snakemake☆12Feb 20, 2026Updated last week
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 2 months ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 3 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 3 months ago
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Sep 19, 2025Updated 5 months ago
- ☆16Apr 18, 2025Updated 10 months ago
- ☆13Jun 21, 2017Updated 8 years ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Apr 28, 2025Updated 10 months ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- ☆14Oct 26, 2017Updated 8 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated last week
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 3 months ago
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated 7 months ago
- Somatic variant identification from unpaired samples☆15Jan 31, 2017Updated 9 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- ☆13Dec 7, 2021Updated 4 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- TIDDIT - structural variant calling☆78Dec 8, 2025Updated 2 months ago
- ☆14Dec 13, 2023Updated 2 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 9 years ago
- Expanded STR algorithm for Illumina sequencing data☆23Sep 11, 2022Updated 3 years ago
- Burden testing against public controls☆50Feb 27, 2024Updated 2 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Feb 23, 2026Updated last week
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Dec 18, 2025Updated 2 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Nov 4, 2024Updated last year
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 6 months ago
- SEQSpark documentation☆18Nov 17, 2020Updated 5 years ago
- A modular annotation tool for genomic variants☆146Updated this week
- A structural variation pipeline for short-read sequencing☆201Updated this week