diskin-lab-chop / AutoGVPLinks
☆21Updated last week
Alternatives and similar repositories for AutoGVP
Users that are interested in AutoGVP are comparing it to the libraries listed below
Sorting:
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 5 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- ☆39Updated last month
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 9 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 6 months ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Burden testing against public controls☆50Updated last year
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆21Updated 8 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- ☆36Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆71Updated 4 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month