diskin-lab-chop / AutoGVPLinks
☆22Updated last week
Alternatives and similar repositories for AutoGVP
Users that are interested in AutoGVP are comparing it to the libraries listed below
Sorting:
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 9 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated last year
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Sanity check Variant Call Format (VCF) files.☆37Updated 9 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Burden testing against public controls☆50Updated last year
- ☆39Updated 5 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 11 months ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆88Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated last week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago