Code and simulations using biologically annotated neural networks
☆23Aug 23, 2021Updated 4 years ago
Alternatives and similar repositories for BANNs
Users that are interested in BANNs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- causal TWAS (cTWAS)☆47Mar 18, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Sep 6, 2022Updated 3 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Bayesian model selection approach for mediation☆12Apr 17, 2023Updated 2 years ago
- A small C and Python library for reading PLINK genotype files.☆51Nov 27, 2024Updated last year
- ☆11Mar 4, 2025Updated last year
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Aug 30, 2024Updated last year
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- ☆17Mar 2, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- De novo transcriptome assembler for short reads☆64Mar 12, 2018Updated 8 years ago
- This is a read-only mirror of the CRAN R package repository. depmixS4 — Dependent Mixture Models - Hidden Markov Models of GLMs and Oth…☆12May 11, 2025Updated 11 months ago
- A BGEN file format reader.☆13Jun 17, 2024Updated last year
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)☆14Jun 16, 2021Updated 4 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆10Mar 31, 2026Updated last week
- Website for Introduction to Data Science at University of Edinburgh, 2020.☆11Jan 30, 2022Updated 4 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- ☆11Apr 25, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Collection of fragmentomic analysis scripts☆13Jul 3, 2024Updated last year
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- ☆13Sep 30, 2023Updated 2 years ago
- A protocol to estimate global ancestry starting from raw Illumina data☆11Oct 16, 2019Updated 6 years ago
- Repository for Short Course: Deep Learning in Omics☆17Jan 13, 2022Updated 4 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Jul 25, 2022Updated 3 years ago
- KERAS: Multimodal Deep Learning for Semantic Segmentation (RGB, NIR Streams) - multiple architectures☆11Jun 19, 2017Updated 8 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- DDI-LLM:💊 Drug-Drug Interaction Prediction: Experimenting With Large Language-Based Drug Information Embedding For Multi-View Representa…☆13Sep 15, 2023Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 3 weeks ago
- Command-line bibliography manager☆15Jun 20, 2025Updated 9 months ago
- Visualization tool for temporal clonal evolution.☆18Mar 13, 2020Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated 10 months ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago