Simulation of rare and common variants based on 1000 genomes data
☆19Sep 24, 2021Updated 4 years ago
Alternatives and similar repositories for sim1000G
Users that are interested in sim1000G are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- ☆32Jul 10, 2025Updated last year
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆57Oct 19, 2025Updated 9 months ago
- A versatile interface to the knockoff methodology.☆26Apr 1, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Model files for Sentieon variant callers☆17Jul 23, 2026Updated 3 weeks ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 9 years ago
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 5 months ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Sep 23, 2017Updated 8 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- Effective Computing—Resources for Computational Biologists☆26Apr 17, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆19Jul 6, 2023Updated 3 years ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆23Jan 23, 2026Updated 6 months ago
- Write CWL in R☆15May 9, 2024Updated 2 years ago
- ☆14Dec 13, 2023Updated 2 years ago
- Script to convert GTC/BPM files to VCF☆48Oct 13, 2025Updated 10 months ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- ☆12Jun 19, 2026Updated last month
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆58Nov 27, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆18Feb 24, 2026Updated 5 months ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆13Jun 11, 2019Updated 7 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- PRS-on-SPARK☆18Feb 4, 2021Updated 5 years ago
- PGxPOP☆17Jan 25, 2023Updated 3 years ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 8 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- A Bioconductor/R package for longitudinal system suitability monitoring and quality control for proteomic experiments☆10Jul 24, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 5 years ago
- Examples using R and 1000 genomes data☆29May 18, 2021Updated 5 years ago
- Paper discribing LDpred2☆16Oct 20, 2022Updated 3 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 10 months ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆58Feb 11, 2026Updated 6 months ago