ThomasArn / genoPlotR_wrapperLinks
Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
☆14Updated 4 years ago
Alternatives and similar repositories for genoPlotR_wrapper
Users that are interested in genoPlotR_wrapper are comparing it to the libraries listed below
Sorting:
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated 3 weeks ago
- Multi-genome synteny block visualization tool☆52Updated last week
- ☆88Updated last month
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆91Updated last year
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- k-mer learning materials☆83Updated 11 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- ☆35Updated 5 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- Synteny Imager☆65Updated last month
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated 2 years ago
- Genome Annotation Pipeline☆42Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆45Updated 3 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆44Updated 2 years ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Updated this week
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Analyses pipelines that I use for my work☆12Updated 4 years ago
- Automatic evaluation of HGTs☆30Updated 11 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated 2 weeks ago
- Neural network classification of TE☆97Updated 3 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Tiberius is a deep learning gene finder.☆90Updated last week
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆31Updated 8 months ago
- A tool for evaluating long-read de novo assembly results☆50Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated last month
- paml documentation and tutorials☆66Updated last week