ThomasArn / genoPlotR_wrapperLinks
Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
☆14Updated 4 years ago
Alternatives and similar repositories for genoPlotR_wrapper
Users that are interested in genoPlotR_wrapper are comparing it to the libraries listed below
Sorting:
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Multi-genome synteny block visualization tool☆47Updated last month
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆84Updated last year
- ☆81Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Automatic evaluation of HGTs☆30Updated 9 months ago
- Synteny Imager☆65Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated this week
- Tiberius is a deep learning gene finder.☆81Updated this week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆46Updated 4 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23Updated 5 years ago
- ☆33Updated 4 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆42Updated 2 years ago
- k-mer learning materials☆80Updated 9 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆76Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated 3 weeks ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- ☆45Updated 3 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆75Updated 2 months ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated 2 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆33Updated 4 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆30Updated 6 months ago
- Genome Annotation Pipeline☆39Updated last year
- ContScout sequence contamination filter tool☆26Updated 5 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆72Updated 2 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆48Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year