ThomasArn / genoPlotR_wrapper
Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
☆14Updated 3 years ago
Alternatives and similar repositories for genoPlotR_wrapper
Users that are interested in genoPlotR_wrapper are comparing it to the libraries listed below
Sorting:
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- ☆32Updated 4 years ago
- Automatic evaluation of HGTs☆28Updated 3 months ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Mobile Genetic Elements Retrieving Tool☆15Updated last week
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated last month
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆42Updated last month
- ContScout sequence contamination filter tool☆20Updated 4 months ago
- ☆9Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆34Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated last week
- MCMCtree tutorials☆23Updated 11 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Genome-Genome circle synteny☆25Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated last month