Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
☆14Oct 5, 2021Updated 4 years ago
Alternatives and similar repositories for genoPlotR_wrapper
Users that are interested in genoPlotR_wrapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 4 months ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆36Apr 10, 2026Updated 3 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- Structural Variant Identification Method using Genome Assemblies☆145Sep 16, 2022Updated 3 years ago
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 7 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments☆11Dec 1, 2020Updated 5 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Jul 12, 2020Updated 6 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- 🧬 Analyzing compression algorithms for genomic sequencing data☆12Feb 14, 2020Updated 6 years ago
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 4 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆16Jul 14, 2026Updated last week
- ☆32Jul 10, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- Welcome to Colab_NAMD_suit, your gateway to running MD simulations!☆18Jun 25, 2024Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- flexible pipelines for scalable secretome prediction, R package☆12Feb 21, 2019Updated 7 years ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago