precimed / simu
Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies
☆11Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for simu
- GENetic Effect-Size distribution Inference from Summary-level data☆14Updated 4 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated last year
- ☆17Updated 3 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- Paper discribing LDpred2☆16Updated 2 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆19Updated 8 months ago
- Scripts used for generating Neale Lab UKB results☆18Updated 2 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆14Updated 2 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- A rapido and lightweight method for PGS computation☆12Updated last month
- fast bgen parser for python☆13Updated 3 months ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 3 years ago
- Modeling and Analysis of (Statistical) Genetics data in python☆16Updated 3 weeks ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆23Updated 3 years ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆12Updated 3 years ago
- R wrapper for a Java Bayesian GLM variable selection package☆15Updated 4 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Older repo for MRLocus. See new website for software usage guide:☆15Updated last year
- Code for performing PCA followed by CCA☆18Updated 5 years ago
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- Sample code for ldsc analyses in UKBB☆28Updated last year
- Framework for efficient high-dimensional association analyses.☆17Updated 3 years ago
- Create LocusZoom-style plots in R.☆20Updated last year
- ☆32Updated last year
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 2 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- Code for the in-dev PrediXcan Project☆28Updated 2 years ago