Specification for the GWAS-VCF format (manuscript in preparation)
☆26Aug 3, 2021Updated 4 years ago
Alternatives and similar repositories for gwas-vcf-specification
Users that are interested in gwas-vcf-specification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binaries for tools used in genetics in an R package☆12Apr 7, 2025Updated last year
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Convert GWAS summary statistics to VCF☆48Apr 13, 2026Updated last month
- Create Regional Association Plots☆13Sep 7, 2025Updated 8 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆39Jan 20, 2021Updated 5 years ago
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆13May 14, 2026Updated 2 weeks ago
- Software to infer latent pleiotropic components from GWAS summary data☆16Jan 30, 2025Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12May 21, 2024Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- Mendelian Randomization with Biomarker Associations for Causality with Outcomes☆27Dec 7, 2018Updated 7 years ago
- Reading, querying and writing GWAS summary data in VCF format☆105Mar 16, 2026Updated 2 months ago
- ☆57Jan 16, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package that contains plink binaries for windows, mac and linux☆16Oct 14, 2019Updated 6 years ago
- https://jinghuazhao.github.io/pQTLtools/☆23Updated this week
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆42Oct 31, 2025Updated 6 months ago
- Hypothesis Prioritisation in multi-trait Colocalization☆56Apr 8, 2024Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- A rapido and lightweight method for PGS computation☆14Apr 20, 2026Updated last month
- Software implementing the Latent Causal Variable Model☆65Jun 30, 2020Updated 5 years ago
- The PheWAS R package☆158Oct 13, 2025Updated 7 months ago
- ☆14May 25, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DEPICT code, instructions and an example☆56Dec 10, 2025Updated 5 months ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Feb 10, 2026Updated 3 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- Tutorial for running Mendelian Randomization analysis using R☆36Apr 29, 2024Updated 2 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆18Oct 15, 2021Updated 4 years ago
- GWAS summary statistics files QC tool☆42Dec 24, 2024Updated last year
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 3 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- ☆29Jul 25, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.☆42Jul 3, 2021Updated 4 years ago
- Colocalization analysis of genetic association signals☆59Jun 13, 2025Updated 11 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- ☆19Sep 20, 2021Updated 4 years ago
- GoDMC analysis pipeline☆17Aug 21, 2020Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆50Dec 27, 2023Updated 2 years ago