Specification for the GWAS-VCF format (manuscript in preparation)
☆26Aug 3, 2021Updated 4 years ago
Alternatives and similar repositories for gwas-vcf-specification
Users that are interested in gwas-vcf-specification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binaries for tools used in genetics in an R package☆12Apr 7, 2025Updated 11 months ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Convert GWAS summary statistics to VCF☆48Mar 11, 2023Updated 3 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆38Jan 20, 2021Updated 5 years ago
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆13Feb 27, 2026Updated last month
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12May 21, 2024Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- Mendelian Randomization with Biomarker Associations for Causality with Outcomes☆26Dec 7, 2018Updated 7 years ago
- Reading, querying and writing GWAS summary data in VCF format☆99Mar 16, 2026Updated last week
- ☆57Jan 16, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package that contains plink binaries for windows, mac and linux☆15Oct 14, 2019Updated 6 years ago
- https://jinghuazhao.github.io/pQTLtools/☆23Mar 25, 2025Updated last year
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆40Oct 31, 2025Updated 4 months ago
- Hypothesis Prioritisation in multi-trait Colocalization☆55Apr 8, 2024Updated last year
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 4 years ago
- A rapido and lightweight method for PGS computation☆14Feb 19, 2025Updated last year
- Software implementing the Latent Causal Variable Model☆65Jun 30, 2020Updated 5 years ago
- The PheWAS R package☆153Oct 13, 2025Updated 5 months ago
- ☆14May 25, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Feb 10, 2026Updated last month
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- Tutorial for running Mendelian Randomization analysis using R☆34Apr 29, 2024Updated last year
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Oct 15, 2021Updated 4 years ago
- GWAS summary statistics files QC tool☆42Dec 24, 2024Updated last year
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 3 years ago
- ☆29Jul 25, 2018Updated 7 years ago
- This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.☆42Jul 3, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Colocalization analysis of genetic association signals☆56Jun 13, 2025Updated 9 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- ☆19Sep 20, 2021Updated 4 years ago
- GoDMC analysis pipeline☆17Aug 21, 2020Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆48Dec 27, 2023Updated 2 years ago
- phenoscanner allows users to query the PhenoScanner database of genotype-phenotype associations from inside R☆56Jul 18, 2022Updated 3 years ago