Specification for the GWAS-VCF format (manuscript in preparation)
☆26Aug 3, 2021Updated 4 years ago
Alternatives and similar repositories for gwas-vcf-specification
Users that are interested in gwas-vcf-specification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binaries for tools used in genetics in an R package☆13Apr 7, 2025Updated last year
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Convert GWAS summary statistics to VCF☆49Apr 13, 2026Updated 3 months ago
- Create Regional Association Plots☆13May 27, 2026Updated 2 months ago
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- ☆40Jan 20, 2021Updated 5 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆30Aug 2, 2022Updated 3 years ago
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆13Jul 8, 2026Updated 3 weeks ago
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12May 21, 2024Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- ☆56Jan 16, 2025Updated last year
- Mendelian Randomization with Biomarker Associations for Causality with Outcomes☆27Dec 7, 2018Updated 7 years ago
- Reading, querying and writing GWAS summary data in VCF format☆110Jul 22, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hypothesis Prioritisation in multi-trait Colocalization☆57Apr 8, 2024Updated 2 years ago
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆42Oct 31, 2025Updated 8 months ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆34Jun 26, 2026Updated last month
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- The PheWAS R package☆159Oct 13, 2025Updated 9 months ago
- A rapido and lightweight method for PGS computation☆14Apr 20, 2026Updated 3 months ago
- ☆11Jan 30, 2025Updated last year
- DEPICT code, instructions and an example☆57Dec 10, 2025Updated 7 months ago
- ☆14May 25, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Software implementing the Latent Causal Variable Model☆66Jun 30, 2020Updated 6 years ago
- GWAS summary statistics files QC tool☆42Dec 24, 2024Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Sep 26, 2024Updated last year
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆18Oct 15, 2021Updated 4 years ago
- ☆29Jul 25, 2018Updated 8 years ago
- Tutorial for running Mendelian Randomization analysis using R☆37Apr 29, 2024Updated 2 years ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 3 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.☆43Jul 3, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;☆21Dec 31, 2021Updated 4 years ago
- Colocalization analysis of genetic association signals☆60Jun 13, 2025Updated last year
- R package for performing Mendelian Randomization using mixture models☆25Jan 27, 2020Updated 6 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆52Dec 27, 2023Updated 2 years ago
- ☆20Sep 20, 2021Updated 4 years ago
- Pariwise analysis of GWAS☆48Sep 27, 2018Updated 7 years ago