MRCIEU / gwas-vcf-specification
Specification for the GWAS-VCF format (manuscript in preparation)
☆24Updated 3 years ago
Alternatives and similar repositories for gwas-vcf-specification
Users that are interested in gwas-vcf-specification are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- Primo☆16Updated 3 years ago
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 8 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Sample code for ldsc analyses in UKBB☆30Updated 2 years ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆13Updated 4 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Create LocusZoom-style plots in R.☆21Updated 2 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆49Updated 2 months ago
- ☆22Updated last year
- FLAMES: Accurate gene prioritization in GWAS loci☆34Updated 2 months ago
- Code for the in-dev PrediXcan Project☆27Updated 2 years ago
- ☆21Updated last month
- software package for integrative genetic association analysis☆34Updated last year
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆24Updated this week
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 2 months ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆37Updated 2 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆12Updated 2 years ago
- A collection of various utilities for GWAS summary statistics☆27Updated last year
- ☆20Updated 2 years ago
- An R package for generating comparative regional association plots☆18Updated 4 months ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 7 months ago
- Code for implementing Mendelian randomization investigations☆17Updated 9 years ago