mfranberg / libplinkioLinks
A small C and Python library for reading PLINK genotype files.
☆51Updated 8 months ago
Alternatives and similar repositories for libplinkio
Users that are interested in libplinkio are comparing it to the libraries listed below
Sorting:
- High-definition reconstruction of clonal composition from next-generation sequencing data☆40Updated 9 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A C library for handling bigWig files☆81Updated 6 months ago
- ☆14Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- conda recipes for genomic data☆85Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- BigWig and BAM utilities☆97Updated last year
- An awk-like VCF parser☆56Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 4 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- ☆37Updated 5 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Ancestry and Kinship Tools☆70Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago