Alternatives and similar repositories for libplinkio

Users that are interested in libplinkio are comparing it to the libraries listed below

• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆86Updated 7 years ago
• andrej-fischer / cloneHD
  High-definition reconstruction of clonal composition from next-generation sequencing data
  ☆42Updated 9 years ago
• dantaki / SV2
  Support Vector Structural Variation Genotyper
  ☆58Updated 5 years ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆43Updated 4 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 4 years ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆44Updated 6 years ago
• ssadedin / bazam
  A read extraction and realignment tool for next generation sequencing data
  ☆104Updated 3 years ago
• Santy-8128 / Minimac3
  Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…
  ☆30Updated 3 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 2 years ago
• awilfert / PSAP-pipeline
  ☆14Updated 8 years ago
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated last month
• broadinstitute / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆25Updated 9 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆74Updated 9 years ago
• lh3 / CHM-eval
  ☆55Updated 5 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated 2 years ago
• poruloh / Eagle
  Haplotype phasing software
  ☆69Updated 5 years ago
• meyer-lab-cshl / PhenotypeSimulator
  ☆30Updated 7 months ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 10 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated last year
• ultimatesource / denovogear
  A program to detect denovo-variants using next-generation sequencing data.
  ☆55Updated 5 years ago
• biocore-ntnu / epic
  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
  ☆31Updated 7 years ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆102Updated last year
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 3 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• freeseek / gwaspipeline
  ☆40Updated 8 years ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆34Updated 3 years ago
• CshlSiepelLab / LINSIGHT
  ☆26Updated 8 months ago
• sequencing / gvcftools
  Utilities to create and analyze gVCF files
  ☆38Updated 8 years ago