mfranberg / libplinkioLinks
A small C and Python library for reading PLINK genotype files.
☆51Updated last year
Alternatives and similar repositories for libplinkio
Users that are interested in libplinkio are comparing it to the libraries listed below
Sorting:
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Haplotype phasing software☆69Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆78Updated 11 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- BigWig and BAM utilities☆99Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- A C library for handling bigWig files☆81Updated 11 months ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆42Updated 9 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…☆30Updated 3 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- ☆27Updated 7 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- conda recipes for genomic data☆84Updated 4 years ago
- R code to compute the Singleton Density Score (SDS)☆31Updated 9 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 3 weeks ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago