stevetsa / awesome-microbesLinks
List of computational resources for analyzing microbial sequencing data.
☆67Updated 3 months ago
Alternatives and similar repositories for awesome-microbes
Users that are interested in awesome-microbes are comparing it to the libraries listed below
Sorting:
- A collection of modules and sub-workflows for Nextflow☆28Updated last week
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- Sample search by metadata and features☆47Updated 2 years ago
- Validate FastQ Files☆36Updated 6 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- just annotate it, dammit!☆92Updated 2 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- An interactive web-tool for RNA-seq analysis☆69Updated 7 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- ☆82Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 2 months ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- ☆35Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 11 months ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 5 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- resources for bioinformatics education☆87Updated 4 months ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated 2 weeks ago
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago