stevetsa / awesome-microbes
List of computational resources for analyzing microbial sequencing data.
☆68Updated last year
Alternatives and similar repositories for awesome-microbes:
Users that are interested in awesome-microbes are comparing it to the libraries listed below
- Scripts, utilities and programs for genomic bioinformatics.☆82Updated this week
- Maximum likelihood demultiplexing☆47Updated last month
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆82Updated 5 months ago
- Microbiome analysis☆51Updated last week
- List of IARC bioinformatics nextflow pipelines☆50Updated 3 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆81Updated last year
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Course homepages for some of the courses given at SciLifeLab☆21Updated 5 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated last week
- BigWig and BAM utilities☆95Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆91Updated 3 weeks ago
- ☆34Updated last year
- ☆82Updated 3 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆56Updated 5 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 6 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- ☆78Updated 11 years ago
- Error correction for Illumina RNA-seq reads☆66Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Super small biological datasets for unit testing☆60Updated 5 years ago
- Get, parse, and extract information from the SRA metadata files☆38Updated 2 years ago
- Issue tracker for the Biostar Handbook☆62Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 10 months ago