stevetsa / awesome-microbesLinks
List of computational resources for analyzing microbial sequencing data.
☆68Updated 3 weeks ago
Alternatives and similar repositories for awesome-microbes
Users that are interested in awesome-microbes are comparing it to the libraries listed below
Sorting:
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- A collection of modules and sub-workflows for Nextflow☆27Updated this week
- List of IARC bioinformatics nextflow pipelines☆51Updated 6 months ago
- ☆35Updated last year
- ☆82Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆87Updated 8 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- just annotate it, dammit!☆93Updated last year
- Microbiome analysis☆52Updated this week
- An interactive web-tool for RNA-seq analysis☆68Updated 4 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- R shiny app for interactive microbiome analysis☆55Updated last month
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 2 months ago
- Sample search by metadata and features☆47Updated last year
- Sphinx documentation source for a computational genomics tutorial.☆34Updated 4 years ago
- Reference genome resource manager☆76Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆39Updated last year