NCBI-Hackathons / Pharmacogenomics_Prediction_Pipeline_P3Links
☆28Updated 6 years ago
Alternatives and similar repositories for Pharmacogenomics_Prediction_Pipeline_P3
Users that are interested in Pharmacogenomics_Prediction_Pipeline_P3 are comparing it to the libraries listed below
Sorting:
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Gene expression viewer template☆11Updated 7 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 7 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated 2 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Examples of kallisto + sleuth☆11Updated 8 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- A framework for network analysis and display of SNPs☆19Updated 8 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- Unix-based RNA-seq quantification pipeline☆10Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- What's The Function of these genes?☆22Updated 8 years ago