NCBI-Hackathons / Pharmacogenomics_Prediction_Pipeline_P3Links
☆28Updated 7 years ago
Alternatives and similar repositories for Pharmacogenomics_Prediction_Pipeline_P3
Users that are interested in Pharmacogenomics_Prediction_Pipeline_P3 are comparing it to the libraries listed below
Sorting:
- Gene expression viewer template☆11Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 10 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated 4 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- ☆17Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- ☆26Updated 5 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 7 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- A framework for network analysis and display of SNPs☆19Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 5 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago