📊Evaluating, filtering, comparing, and visualising VCF
☆29Mar 9, 2023Updated 3 years ago
Alternatives and similar repositories for vcf_stuff
Users that are interested in vcf_stuff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 3 months ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- call copy number from WES(WXS)☆11May 10, 2021Updated 5 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13May 5, 2026Updated 2 weeks ago
- Core utilities for single-cell RNA-seq☆13Apr 6, 2026Updated last month
- ☆29Feb 17, 2021Updated 5 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- bioinformatics R test code☆14Mar 29, 2026Updated last month
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 6 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆31Apr 19, 2018Updated 8 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated last month
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆205Apr 25, 2026Updated 3 weeks ago
- DNA copy number detection from off-target sequence data☆34May 17, 2018Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Mar 4, 2023Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- Illumina analysis pipeline☆14Apr 6, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A textbook on population genetics☆18Mar 19, 2026Updated 2 months ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 8 months ago
- R interface to genome annotation files and the UCSC genome browser☆36Mar 15, 2026Updated 2 months ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated last month