πEvaluating, filtering, comparing, and visualising VCF
β29Mar 9, 2023Updated 3 years ago
Alternatives and similar repositories for vcf_stuff
Users that are interested in vcf_stuff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to organise and standardise your genomic variant calls obtained with different callers.β11Jul 15, 2019Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processingβ24Sep 18, 2023Updated 3 years ago
- Predicting oncogenic potential of gene fusionsβ12Feb 13, 2016Updated 10 years ago
- Collection of notes and scripts related to NGSβ14Sep 2, 2026Updated last month
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumorsβ14Jul 10, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reproducible Workflows, curated at the Fred Hutchβ12Jan 21, 2026Updated 9 months ago
- Generate and process BAM files from Illumina sequencing instrument filesβ23Feb 25, 2016Updated 10 years ago
- Allele frequency filter appβ15May 4, 2022Updated 4 years ago
- β10Apr 10, 2016Updated 10 years ago
- Haplotype-based somatic genome simulatorβ10Apr 20, 2026Updated 6 months ago
- call copy number from WES(WXS)β12May 10, 2021Updated 5 years ago
- β15Apr 20, 2023Updated 3 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq dataβ26Oct 30, 2025Updated last year
- Python Scripts for Bioinformaticsβ15Apr 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (suchβ¦β54Jun 5, 2017Updated 9 years ago
- Simple matching of HTS samples based on HLA typingβ14Jan 4, 2017Updated 9 years ago
- Core utilities for single-cell RNA-seqβ13Jun 16, 2026Updated 4 months ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/β12Feb 28, 2019Updated 7 years ago
- β28Feb 17, 2021Updated 5 years ago
- Deconvolve individual immune cell types from cancer dataβ10Apr 29, 2017Updated 9 years ago
- Allele frequency filtering for Mendelian variant discoveryβ18Sep 27, 2016Updated 10 years ago
- β29Sep 23, 2019Updated 7 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Languageβ21Nov 3, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 π£β11Apr 28, 2023Updated 3 years ago
- An R package for predicting HR deficiency from mutation contextsβ30Feb 13, 2025Updated last year
- Open workflow definitions for genomic analysis from MGI at WUSM.β107Jun 23, 2025Updated last year
- cnv-seq with custom bugfixβ10Mar 23, 2013Updated 13 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are dβ¦β23Sep 24, 2018Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rulesβ79Oct 30, 2023Updated 3 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QCβ18Aug 22, 2025Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomesβ25May 2, 2018Updated 8 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detectionβ21Aug 23, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- β13May 16, 2016Updated 10 years ago
- A graduate-level elective course: Python Programming for Life Science Studentsβ10Mar 26, 2026Updated 7 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2β31Apr 19, 2018Updated 8 years ago
- Personal Cancer Genome Reporter (PCGR)β284Updated this week
- Immune deconvolution of publicly available TCGA expression dataβ11Jan 28, 2019Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.β98Apr 20, 2026Updated 6 months ago
- Creates a rarefaction curve to measure complexity in RNA Seq data using start positionβ13Apr 2, 2017Updated 9 years ago