📊Evaluating, filtering, comparing, and visualising VCF
☆29Mar 9, 2023Updated 3 years ago
Alternatives and similar repositories for vcf_stuff
Users that are interested in vcf_stuff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 7 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 6 months ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Apr 10, 2016Updated 10 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated last month
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13May 5, 2026Updated 3 months ago
- ☆29Feb 17, 2021Updated 5 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 9 months ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- bioinformatics R test code☆14May 29, 2026Updated 2 months ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆14Mar 4, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 11 months ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆32Apr 19, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 4 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated last month
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆206Updated this week
- extract SV signal from a BAM☆10Jul 26, 2018Updated 8 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- Repository☆10Oct 23, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Illumina analysis pipeline☆14Apr 6, 2020Updated 6 years ago
- DNA copy number detection from off-target sequence data☆34May 17, 2018Updated 8 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- R interface to genome annotation files and the UCSC genome browser☆36Jun 11, 2026Updated 2 months ago
- ☆29Sep 23, 2019Updated 6 years ago