umccr / vcf_stuff
πEvaluating, filtering, comparing, and visualising VCF
β27Updated 2 years ago
Alternatives and similar repositories for vcf_stuff
Users that are interested in vcf_stuff are comparing it to the libraries listed below
Sorting:
- An R package for predicting HR deficiency from mutation contextsβ28Updated 3 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variationsβ29Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number vaβ¦β22Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing readsβ23Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.β28Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer driversβ15Updated 6 years ago
- DriverPowerβ26Updated 3 months ago
- β13Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needsβ30Updated last year
- β34Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.β35Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencingβ37Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount dataβ29Updated 2 months ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions β¦β17Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomesβ26Updated 7 years ago
- Filter and prioritize fusion callsβ20Updated 7 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alleβ¦β44Updated 2 years ago
- Codes and Data for FFPEsig manuscriptβ16Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.β35Updated 10 months ago
- MSKCC Reis-Filho Lab pipeline thingyβ17Updated 9 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analysesβ31Updated 3 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variantsβ22Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumoursβ29Updated last month
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNAβ27Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amaβ¦β21Updated 2 years ago
- a set of NGS pipelinesβ24Updated last week
- Tutorials covering various topics in genomic data analysis.β17Updated 6 years ago
- Filtering of PDX samples for mouse derived readsβ27Updated 2 years ago
- Filters for false-positive mutation calls in NGSβ30Updated 6 years ago