umccr / vcf_stuffLinks
📊Evaluating, filtering, comparing, and visualising VCF
☆28Updated 2 years ago
Alternatives and similar repositories for vcf_stuff
Users that are interested in vcf_stuff are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆30Updated last week
- DriverPower☆26Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Mapped QC analysis program☆43Updated 7 years ago
- DNA copy number detection from off-target sequence data☆33Updated 7 years ago
- ☆36Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 2 weeks ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆25Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆17Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- ☆46Updated 6 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year