Alternatives and similar repositories for variant_calling_pipeline:

Users that are interested in variant_calling_pipeline are comparing it to the libraries listed below

• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 3 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated last year
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated last year
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 8 years ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆16Updated 2 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 3 years ago
• friedue / course_RNA-seq2017
  ☆12Updated 7 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated last year
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆45Updated 4 months ago
• egaffo / CirComPara
  A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
  ☆15Updated 4 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 5 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆34Updated 2 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 5 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last week
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆24Updated 5 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last week
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 3 weeks ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated 2 months ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 6 years ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆19Updated last year