ssadedin / variant_calling_pipelineLinks
A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.
☆14Updated 11 years ago
Alternatives and similar repositories for variant_calling_pipeline
Users that are interested in variant_calling_pipeline are comparing it to the libraries listed below
Sorting:
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated last month
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 2 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 6 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- TOP results by CONfident efFECT Sizes.☆14Updated 7 months ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Updated 5 years ago
- Glimma R package☆50Updated 10 months ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- Genomic plot in trellis layout☆40Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆23Updated last week
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 8 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- ☆21Updated 10 months ago
- A tidy interface for coverage analysis☆30Updated 5 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 10 months ago