dcdanko / MD2
MicrobeDirectory 2.0
☆22Updated 4 years ago
Alternatives and similar repositories for MD2:
Users that are interested in MD2 are comparing it to the libraries listed below
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- ☆13Updated last year
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 5 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated 10 months ago
- ☆23Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 10 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 4 months ago
- Automatic Assembly For The Fungi☆19Updated 3 weeks ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- An R package designed for drawing gene arrow maps☆43Updated this week
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆14Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 weeks ago
- Metagenomics Workshop☆28Updated 8 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated last month
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year