dcdanko / MD2Links
MicrobeDirectory 2.0
☆22Updated 4 years ago
Alternatives and similar repositories for MD2
Users that are interested in MD2 are comparing it to the libraries listed below
Sorting:
- ☆13Updated last year
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- ☆23Updated 6 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- ☆45Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Extract lineage CSVs from NCBI for use with sourmash lca.☆28Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆23Updated 5 years ago
- StrainFinder☆27Updated 6 years ago
- MAG Circularization Method☆33Updated 3 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 4 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year