a Graph database and R package for omic data integration
☆19Oct 28, 2016Updated 9 years ago
Alternatives and similar repositories for grinn
Users that are interested in grinn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Tool for automated Optimization of XCMS Parameters☆34Nov 27, 2022Updated 3 years ago
- Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016☆15Sep 28, 2021Updated 4 years ago
- Metabolomics Tools for Galaxy☆21Nov 22, 2016Updated 9 years ago
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- Computational method for Comparative ReConstruction of genome-scale metabolic networks☆22Mar 23, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 9 years ago
- Bondorder and formal charge determination for molecules☆10Jan 16, 2022Updated 4 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆13Apr 29, 2026Updated last week
- Machine learning for molecules workshop 2022☆13Nov 30, 2022Updated 3 years ago
- Repo hosting the MetFrag website☆10Apr 6, 2026Updated last month
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Dec 10, 2025Updated 4 months ago
- Introduction to single-cell RNA-Seq analysis workshop☆15Feb 1, 2017Updated 9 years ago
- Markdown version of Cytoscape manual☆12Sep 27, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- OpenBabel wrapper package for R☆10Mar 12, 2026Updated last month
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆16Jun 1, 2023Updated 2 years ago
- ☆25Aug 5, 2025Updated 9 months ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆13Mar 27, 2026Updated last month
- Dockerized version of the EBI Ontology Lookup Service☆10Aug 14, 2019Updated 6 years ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Ninja Is Not Just Another OTU Picking Solution☆22Apr 23, 2018Updated 8 years ago
- Interactive benchmarking of ranking and assignment methods☆16Apr 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Example R script to use Cytoscape via RESTful API module.☆28Apr 22, 2019Updated 7 years ago
- An R/shiny widget for cytoscape.js☆97Aug 6, 2024Updated last year
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 2 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)☆15Mar 10, 2026Updated last month
- Code for the AAAI 2012 Manifold Warping paper: http://people.cs.umass.edu/~ccarey/pubs/ManifoldWarping.pdf☆20Mar 9, 2018Updated 8 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 9 months ago
- Control an Illumina HiSeq 2500 System☆21Apr 27, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 7 years ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆20Jan 24, 2024Updated 2 years ago
- Semantic Similarity in Bio-Ontologies☆18Jan 30, 2026Updated 3 months ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- Tool to predict (bio)chemical reactions using graph mining.☆22Nov 29, 2017Updated 8 years ago