kwanjeeraw / grinnLinks
a Graph database and R package for omic data integration
☆20Updated 8 years ago
Alternatives and similar repositories for grinn
Users that are interested in grinn are comparing it to the libraries listed below
Sorting:
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 7 years ago
- ☆17Updated 4 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 months ago
- Reproducible GSEA Benchmarking☆13Updated last month
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10Updated 8 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 3 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- iDEP: integrated Differential Expression & Pathway analysis☆15Updated 6 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆13Updated 3 years ago
- Source code of the R packge BgeeDB to use data from the Bgee database☆16Updated 4 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Template for building a bioconductor workshop package using github actions☆20Updated 11 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R interface to Chemical Translation Service (CTS)☆15Updated 10 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 6 months ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- R codes for creating metamapp graphs and files☆8Updated 2 years ago
- R interface to morpheus.js heatmap widget☆38Updated 4 years ago
- MeSH Enrichment and Semantic analyses☆12Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 weeks ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12Updated 6 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated last week
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 5 years ago