kwanjeeraw / grinn
a Graph database and R package for omic data integration
☆20Updated 8 years ago
Alternatives and similar repositories for grinn:
Users that are interested in grinn are comparing it to the libraries listed below
- ☆17Updated 4 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 6 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 weeks ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10Updated 7 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- R interface to Chemical Translation Service (CTS)☆14Updated 9 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 weeks ago
- ☆10Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated this week
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- R interface to morpheus.js heatmap widget☆38Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Reproducible GSEA Benchmarking☆13Updated 3 weeks ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 3 years ago
- Template for building a bioconductor workshop package using github actions☆20Updated 9 months ago
- Gene network analysis☆19Updated 2 years ago
- Public repository for building and analyzing protein complex maps☆11Updated 8 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆19Updated 6 years ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Updated 2 years ago
- DEAPP shiny App☆30Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Updated 2 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Quick access to gene synonyms☆27Updated last week
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 4 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago