kendomaniac / rCASCLinks
rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
☆13Updated 2 months ago
Alternatives and similar repositories for rCASC
Users that are interested in rCASC are comparing it to the libraries listed below
Sorting:
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 2 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- ☆12Updated 4 years ago
- ☆29Updated 6 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated last week
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- ☆24Updated 3 weeks ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 7 months ago
- ☆40Updated 7 years ago
- ☆41Updated 4 years ago
- ☆9Updated 9 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆25Updated 2 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- An R package for visualising cell-cell interactions☆44Updated 10 months ago
- GWAS gold standards repository☆34Updated last year
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- R code in workflow of chip-seq analysis☆11Updated 5 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆11Updated last month
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago