kendomaniac / rCASCLinks
rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
☆14Updated 7 months ago
Alternatives and similar repositories for rCASC
Users that are interested in rCASC are comparing it to the libraries listed below
Sorting:
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆22Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- ☆12Updated 4 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Uncovering cell identity genes using differential stability of expression in single cells.☆12Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated last month
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- scDataviz: single cell dataviz and downstream analyses☆64Updated 4 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 7 months ago
- ☆61Updated 4 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- XEnograft Visualization & Analysis☆11Updated last month
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆26Updated 7 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Updated 4 years ago