kendomaniac / rCASCLinks
rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
☆13Updated last month
Alternatives and similar repositories for rCASC
Users that are interested in rCASC are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆15Updated last week
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated last month
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆11Updated 3 years ago
- XEnograft Visualization & Analysis☆11Updated 2 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- ☆29Updated 6 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 7 months ago
- ☆36Updated 10 months ago
- ☆40Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Tools for assessing clustering robustness☆25Updated last week
- ☆41Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆19Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- An R package for visualising cell-cell interactions☆44Updated 9 months ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆25Updated 3 years ago