Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks
☆18Jun 2, 2022Updated 4 years ago
Alternatives and similar repositories for DAISM-XMBD
Users that are interested in DAISM-XMBD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- SCDC☆47Jun 20, 2025Updated last year
- Unified access to several second-generation deconvolution methods☆105Updated this week
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- ☆12Oct 31, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- R package for benchmarking single cell analysis methods☆33Oct 4, 2023Updated 2 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- Shell bootloader for data science.☆11Updated this week
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆41Jun 6, 2024Updated 2 years ago
- Hyperdimensional computing in Julia☆19Mar 24, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- ☆27May 22, 2025Updated last year
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 5 years ago
- PDF and notebooks of GUDHI presentation @ NIPS 2017☆15Jan 22, 2018Updated 8 years ago
- Unified environment and Issue tracker for all IBL☆18Mar 19, 2026Updated 3 months ago
- Cell types enrichment analysis☆211May 27, 2024Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆44May 20, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆18Apr 10, 2015Updated 11 years ago
- This repository is made to share the REFINED (Representation of Features as Images with NEighborhood Dependencies)☆22Oct 23, 2020Updated 5 years ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆544Jun 1, 2026Updated last month
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆43Nov 28, 2025Updated 7 months ago
- Created a RNN with LSTM cells to learn patterns from SMILES Strings, and use them to generate new molecular structures.☆18Mar 18, 2019Updated 7 years ago
- circlize examples☆11Jun 23, 2020Updated 6 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11Apr 3, 2026Updated 3 months ago
- R package with netDx software and data for examples☆13Feb 22, 2023Updated 3 years ago
- ☆62Jun 21, 2022Updated 4 years ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 5 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Jun 23, 2026Updated 2 weeks ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆61Mar 24, 2026Updated 3 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year