Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks
☆18Jun 2, 2022Updated 4 years ago
Alternatives and similar repositories for DAISM-XMBD
Users that are interested in DAISM-XMBD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.☆16Sep 19, 2025Updated 10 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- SCDC☆48Jun 20, 2025Updated last year
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- Unified access to several second-generation deconvolution methods☆109Jul 6, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Oct 31, 2020Updated 5 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jul 6, 2026Updated 3 weeks ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- R package for benchmarking single cell analysis methods☆33Oct 4, 2023Updated 2 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 5 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- Hyperdimensional computing in Julia☆19Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ConsensusTME Gene Sets and R Script☆41Jun 6, 2024Updated 2 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- Data preprocessing for IUPUI-CSRC Pedestrian Situated Intent (PSI) benchmark dataset.☆11Oct 5, 2023Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆44May 20, 2026Updated 2 months ago
- Unified environment and Issue tracker for all IBL☆19Mar 19, 2026Updated 4 months ago
- PDF and notebooks of GUDHI presentation @ NIPS 2017☆15Jan 22, 2018Updated 8 years ago
- Cell types enrichment analysis☆213May 27, 2024Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆18Apr 10, 2015Updated 11 years ago
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 10 years ago
- classifying human DNA sequence and random ATCG sequences, using keras CNN☆23Jul 8, 2017Updated 9 years ago
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 3 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆546Jul 6, 2026Updated 3 weeks ago
- circlize examples☆11Jun 23, 2020Updated 6 years ago
- A no hassle tool for analyzing your favorite CRISPR screen dataset!☆11Apr 16, 2021Updated 5 years ago
- Software and analysis of metabolism studies across multiple cancer types☆11Sep 5, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11Apr 3, 2026Updated 3 months ago
- R package with netDx software and data for examples☆13Feb 22, 2023Updated 3 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆43Nov 28, 2025Updated 8 months ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 5 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Mar 16, 2024Updated 2 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆12Jul 7, 2026Updated 3 weeks ago