☆50Nov 7, 2024Updated last year
Alternatives and similar repositories for bulkvis
Users that are interested in bulkvis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆82May 24, 2020Updated 6 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Apr 29, 2024Updated 2 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆119Mar 2, 2026Updated 7 months ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 7 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Dec 20, 2018Updated 7 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆33Feb 25, 2022Updated 4 years ago
- Signal-level algorithms for MinION data☆601Aug 5, 2023Updated 3 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An Oxford Nanopore Basecaller☆71Sep 4, 2021Updated 5 years ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Jun 24, 2021Updated 5 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆112Jun 15, 2026Updated 4 months ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆173Aug 25, 2026Updated 2 months ago
- Full-Length Alternative Isoform analysis of RNA☆258Oct 23, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆85Mar 3, 2025Updated last year
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Jan 13, 2022Updated 4 years ago
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 7 months ago
- Raw nanopore signal mapper that enables real-time targeted sequencing☆531Mar 5, 2024Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆124Jan 18, 2021Updated 5 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Just Another JAva Package for Sequence Analysis☆27Dec 2, 2022Updated 3 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 11 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- adapter trimmer for Oxford Nanopore reads☆389May 8, 2024Updated 2 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 6 years ago
- ☆10Mar 11, 2025Updated last year
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago