LooseLab / bulkvis
☆48Updated 6 months ago
Alternatives and similar repositories for bulkvis:
Users that are interested in bulkvis are comparing it to the libraries listed below
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- ☆29Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆46Updated 8 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆103Updated 2 weeks ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 6 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Filter SAM file for soft and hard clipped alignments☆48Updated 11 months ago
- ☆79Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 4 years ago