PacificBiosciences / pypeFLOWLinks
a simple lightweight workflow engine for data analysis scripting
☆11Updated 6 years ago
Alternatives and similar repositories for pypeFLOW
Users that are interested in pypeFLOW are comparing it to the libraries listed below
Sorting:
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Query language for filtering SAM/BAM reads☆31Updated last year
- Generate and process BAM files from Illumina sequencing instrument files☆23Updated 9 years ago
- Explore and analyze biological sequence data☆17Updated last year
- ☆18Updated 3 years ago
- useful command-line tools written to showcase hts-nim☆50Updated 5 years ago
- This pipeline has moved! Please see:☆11Updated 7 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18Updated 7 years ago
- Fast & accurate alignment of barcoded short-reads☆32Updated 2 years ago
- ☆10Updated 7 years ago
- The integrated pipeline for Indel detection☆17Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Windowed Adaptive Trimming for fastq files using quality☆25Updated 10 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Query Mutated Reads from a Bam☆26Updated 6 years ago
- ☆47Updated 2 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 6 months ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Updated 8 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Complex structural variant detection from WGS data☆30Updated 10 months ago
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- LoFreq Version 3☆27Updated 4 years ago
- Deduplication for cfDNA sequencing data☆11Updated 8 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago