GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure
☆24Feb 21, 2019Updated 7 years ago
Alternatives and similar repositories for GenomeFlow
Users that are interested in GenomeFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for processing HIC data.☆11May 21, 2021Updated 4 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 7 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆19Dec 18, 2022Updated 3 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated 2 years ago
- Scripts for next generation sequencing analyses☆15Nov 6, 2025Updated 4 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22May 26, 2020Updated 5 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated 2 years ago
- Hi-C data analysis tool☆13May 31, 2017Updated 8 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Jupyter notebook based genomic data visualization toolkit.☆253Dec 4, 2025Updated 3 months ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- ☆13Jan 20, 2026Updated 2 months ago
- ☆13Nov 13, 2018Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HiCorr: a Hi-C data bias-correction pipeline☆30Apr 1, 2025Updated 11 months ago
- ☆11Jul 4, 2022Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆16Nov 7, 2025Updated 4 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Jul 18, 2023Updated 2 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- Use Thor's Axe to cut exons into their evolutionary building blocks☆12Feb 3, 2026Updated last month
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- FAN-C: Framework for the ANalysis of C-like data☆122Mar 13, 2024Updated 2 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated last month
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Jul 9, 2019Updated 6 years ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆11Aug 12, 2020Updated 5 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Oct 14, 2018Updated 7 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Aug 29, 2022Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 4 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- ☆29Apr 23, 2025Updated 11 months ago
- Package for analysis and characterization of differential TADs☆26Apr 25, 2022Updated 3 years ago