FunctionaL Omics Processing platform
☆12Jul 25, 2024Updated 2 years ago
Alternatives and similar repositories for flop
Users that are interested in flop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆31Jul 3, 2025Updated last year
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776)☆10Oct 23, 2026Updated last week
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 10 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- ☆11Oct 23, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- Nextflow pipeline wrapper for executing Cell Ranger☆12Mar 8, 2022Updated 4 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Sep 28, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Function Enrichment analysis and Network construction☆16Updated this week
- ☆11Jan 13, 2021Updated 5 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 4 years ago
- AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works☆12Apr 15, 2022Updated 4 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Methods for assembling high-quality genomes☆12Jul 7, 2023Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Snakemake pipeline to analyze transposable element 'omics data.☆34Oct 19, 2026Updated last week
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆38Sep 30, 2024Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆57Updated this week
- ☆10Feb 14, 2022Updated 4 years ago
- Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabo…☆13Oct 21, 2026Updated last week
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 4 months ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 5 years ago
- Long Read Based SV Calling Tools Analysis☆15Mar 22, 2024Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆23Jun 23, 2026Updated 4 months ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 7 months ago
- EasyHap is a cross-platform toolkit for regional haplotype analysis and visualization using phased VCF data from fungal, plant, and anima…☆21Oct 10, 2026Updated 2 weeks ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 4 years ago
- ☆15Feb 1, 2023Updated 3 years ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 10 months ago
- ☆10Aug 29, 2023Updated 3 years ago