Alternatives and similar repositories for flop:

Users that are interested in flop are comparing it to the libraries listed below

• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated last week
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆16Updated 5 months ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 6 years ago
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆12Updated 5 months ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 3 months ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated last month
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆12Updated 5 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆21Updated 5 months ago
• NBISweden / workshop-mlbiostatistics
  ☆16Updated last week
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 8 months ago
• flemingtonlab / SpliceTools
  ☆17Updated 9 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated 2 months ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 7 months ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 4 months ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated 10 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• nch-igm / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆19Updated last week
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆16Updated 8 months ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆13Updated this week
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 3 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 10 months ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year