haowulab / Wind
weighted indexes for clustering evaluation
☆15Updated 4 years ago
Alternatives and similar repositories for Wind:
Users that are interested in Wind are comparing it to the libraries listed below
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆12Updated 5 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- scID☆13Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- ☆20Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- ☆22Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆13Updated 7 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 5 months ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated 7 months ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago