solevillar / scGeneFit-pythonLinks
Python code for genetic marker selection using linear programming
☆42Updated last year
Alternatives and similar repositories for scGeneFit-python
Users that are interested in scGeneFit-python are comparing it to the libraries listed below
Sorting:
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆29Updated 2 years ago
- ☆37Updated last month
- post-clustering differential expression test☆36Updated 6 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- MultiMAP for integration of single cell multi-omics☆56Updated 2 years ago
- ☆21Updated 2 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- ☆31Updated 4 years ago
- ☆28Updated 2 years ago
- Bayesian MCMC matrix factorization algorithm☆70Updated 2 months ago
- Code to reproduce analysis of Milo manuscript☆14Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- ☆21Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Simulating single-cell data using gene regulatory networks 📠☆77Updated last year
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆59Updated 3 years ago
- A tool for single-cell data analysis.☆41Updated last month