angelettilab / scMouseBcellFluLinks
☆18Updated 3 years ago
Alternatives and similar repositories for scMouseBcellFlu
Users that are interested in scMouseBcellFlu are comparing it to the libraries listed below
Sorting:
- R package for the analysis of single-cell immune repertoires☆43Updated 10 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- ☆62Updated 5 years ago
- Using TCR and expression for sequence embedding☆60Updated 4 months ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆26Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- ☆68Updated 2 years ago
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated last year
- scWGCNA☆61Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆88Updated 2 weeks ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆48Updated 11 months ago
- ☆80Updated last year
- Inference of TCR motifs☆32Updated 6 months ago
- ☆39Updated 4 years ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- R package to access DoRothEA's regulons☆152Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- ☆89Updated 4 months ago