Alternatives and similar repositories for StabilityOracle

Users that are interested in StabilityOracle are comparing it to the libraries listed below

• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated this week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆65Updated 2 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆52Updated 2 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆65Updated 2 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 7 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 9 months ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆34Updated last month
• RSCJacksonLab / local-ancestral-sequence-embeddings
  This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".
  ☆12Updated 5 months ago
• bene837 / af2seq
  ☆44Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• regeneron-mpds / propermab
  ☆34Updated 5 months ago
• Alex-Abrudan / DynamicMPNN
  ☆34Updated last month
• Kuhlman-Lab / evopro
  ☆87Updated last month
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 9 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆49Updated 7 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆54Updated 9 months ago
• ELELAB / RosettaDDGPrediction
  ☆75Updated 7 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated 8 months ago
• bunzela / AIzymes
  ☆55Updated last month
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 5 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆65Updated 9 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆52Updated 3 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆117Updated 2 months ago
• anirudhvenk / antibody-dpo
  ☆24Updated 3 months ago
• danny305 / MutComputeX
  ☆24Updated last year
• baker-laboratory / CA_RFDiffusion
  ☆71Updated 3 months ago
• sokrypton / af2bind
  ☆49Updated 2 months ago