β50Jun 15, 2026Updated 2 weeks ago
Alternatives and similar repositories for ermsfkit
Users that are interested in ermsfkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β18Apr 13, 2026Updated 2 months ago
- π A lightweight molecular dynamics pipeline for running protein simulations on portable hardwareβ50Mar 23, 2026Updated 3 months ago
- β116Jun 22, 2026Updated last week
- MAGPIEβ17May 5, 2024Updated 2 years ago
- User friendly molecular dynamics simulation combining Modeller, OpenMM and Google Colab: A complete guideβ22Jun 16, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Updated Protpardelle models with more robust motif scaffolding and multichain supportβ82May 1, 2026Updated 2 months ago
- A modular and user-friendly Python framework for protein and ligand engineering workflows on SLURM clustersβ97Updated this week
- β34Apr 16, 2026Updated 2 months ago
- MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral angβ¦β30Jun 18, 2026Updated last week
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinityβ13Feb 6, 2025Updated last year
- An open-source platform for developing protein models beyond AlphaFold.β11Jul 15, 2025Updated 11 months ago
- Code for running BinderFlowβ66Jun 22, 2026Updated last week
- An intelligent command line interface for ChimeraXβ23Jun 14, 2026Updated 2 weeks ago
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.β22Mar 13, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- β46Dec 30, 2025Updated 6 months ago
- Structure prediction and design of proteins with noncanonical amino acidsβ138Feb 1, 2026Updated 5 months ago
- Rapid Generation of Rare Event Pathways Using Direction Guided Adaptive Sampling: From Ligand Unbinding to Protein (Un)Foldingβ38Updated this week
- β69May 18, 2026Updated last month
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNNβ43Jun 12, 2026Updated 2 weeks ago
- β56Mar 12, 2026Updated 3 months ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulationsβ20Feb 25, 2026Updated 4 months ago
- Ligand-Protein Interaction Mappingβ81Mar 31, 2026Updated 3 months ago
- Fast protein backbone flexibility prediction modelβ35Jan 4, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for the paper "Learning to engineer protein flexibility".β22Mar 24, 2026Updated 3 months ago
- Deep learning tools for peptide substrate prediction and generationβ44Nov 20, 2025Updated 7 months ago
- Tokenizing Loops of Antibodiesβ35Nov 23, 2025Updated 7 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2xβ48May 11, 2026Updated last month
- β47Sep 16, 2024Updated last year
- Cyclic DNA Sequence Alignerβ11Apr 15, 2020Updated 6 years ago
- Interpretable, protein structure-based prediction of missense variant deleteriousness.β23Aug 6, 2025Updated 10 months ago
- MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structureβ¦β12Jun 18, 2023Updated 3 years ago
- Lightweight induced fit dockingβ22May 22, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Accessing AlphaMissense Data Resources in Rβ13Nov 26, 2025Updated 7 months ago
- Deep generative modeling of protein structural ensemblesβ37May 27, 2026Updated last month
- β33Mar 2, 2026Updated 3 months ago
- Visualization tool for changing networksβ20May 11, 2018Updated 8 years ago
- DSDPFlex: Flexible-Receptor Docking with GPU Accelerationβ25Dec 24, 2025Updated 6 months ago
- Molecular dynamics simulations with an LLM agentβ241Jan 9, 2026Updated 5 months ago
- an innovative strategy for missense mutant protein structures prediction based on AlphaFold2 and Molecular Dynamics Simulationβ13May 21, 2024Updated 2 years ago