☆49Nov 19, 2025Updated 6 months ago
Alternatives and similar repositories for ermsfkit
Users that are interested in ermsfkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Apr 13, 2026Updated last month
- 👑 A lightweight molecular dynamics pipeline for running protein simulations on portable hardware☆41Mar 23, 2026Updated last month
- ☆107May 7, 2026Updated 2 weeks ago
- MAGPIE☆16May 5, 2024Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆81May 1, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- User friendly molecular dynamics simulation combining Modeller, OpenMM and Google Colab: A complete guide☆21May 15, 2026Updated last week
- A modular and user-friendly Python framework for protein and ligand engineering workflows on SLURM clusters☆85Updated this week
- ☆33Apr 16, 2026Updated last month
- MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral ang…☆30Apr 26, 2026Updated 3 weeks ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 10 months ago
- Code for running BinderFlow☆66Nov 21, 2025Updated 6 months ago
- An intelligent command line interface for ChimeraX☆22Apr 30, 2026Updated 3 weeks ago
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆23Mar 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆46Dec 30, 2025Updated 4 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆131Feb 1, 2026Updated 3 months ago
- Rapid Generation of Rare Event Pathways Using Direction Guided Adaptive Sampling: From Ligand Unbinding to Protein (Un)Folding☆38Nov 25, 2025Updated 5 months ago
- ☆67Updated this week
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆29May 10, 2026Updated last week
- ☆55Mar 12, 2026Updated 2 months ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated 2 months ago
- Ligand-Protein Interaction Mapping☆80Mar 31, 2026Updated last month
- Fast protein backbone flexibility prediction model☆35Jan 4, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for the paper "Learning to engineer protein flexibility".☆23Mar 24, 2026Updated last month
- Deep learning tools for peptide substrate prediction and generation☆44Nov 20, 2025Updated 6 months ago
- Tokenizing Loops of Antibodies☆34Nov 23, 2025Updated 5 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆33May 11, 2026Updated last week
- ☆47Sep 16, 2024Updated last year
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- Interpretable, protein structure-based prediction of missense variant deleteriousness.☆23Aug 6, 2025Updated 9 months ago
- MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structure…☆12Jun 18, 2023Updated 2 years ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Accessing AlphaMissense Data Resources in R☆13Nov 26, 2025Updated 5 months ago
- Deep generative modeling of protein structural ensembles☆37Apr 20, 2026Updated last month
- ☆34Mar 2, 2026Updated 2 months ago
- Visualization tool for changing networks☆20May 11, 2018Updated 8 years ago
- DSDPFlex: Flexible-Receptor Docking with GPU Acceleration☆25Dec 24, 2025Updated 4 months ago
- Molecular dynamics simulations with an LLM agent☆238Jan 9, 2026Updated 4 months ago
- an innovative strategy for missense mutant protein structures prediction based on AlphaFold2 and Molecular Dynamics Simulation☆13May 21, 2024Updated 2 years ago