Alternatives and similar repositories for RFdiffusion2

Users that are interested in RFdiffusion2 are comparing it to the libraries listed below

• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆217Updated last month
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆277Updated this week
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆214Updated 4 months ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆228Updated 4 months ago
• ikalvet / heme_binder_diffusion
  ☆143Updated 5 months ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆349Updated last month
• yehlincho / BoltzDesign1
  ☆230Updated 4 months ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆315Updated 2 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆249Updated last month
• dauparas / LigandMPNN
  ☆511Updated 10 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆235Updated 4 months ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆218Updated 10 months ago
• RosettaCommons / RFantibody
  ☆404Updated last month
• ChatMol / ChatMol
  ChatMol
  ☆242Updated last month
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆205Updated 8 months ago
• uw-ipd / RoseTTAFold2
  ☆205Updated 8 months ago
• RosettaCommons / atomworks
  A generalized computational framework for biomolecular modeling.
  ☆377Updated last week
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆456Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆323Updated last year
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆275Updated 2 years ago
• plinder-org / plinder
  Protein Ligand INteraction Dataset and Evaluation Resource
  ☆267Updated 2 weeks ago
• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
  ☆168Updated last week
• nrbennet / dl_binder_design
  ☆376Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆159Updated 3 weeks ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆168Updated 3 months ago
• guyujun / pyrosetta-basic
  ☆177Updated 4 years ago
• maabuu / posebusters
  Plausibility checks for generated molecule poses.
  ☆345Updated 2 weeks ago
• HannesStark / boltzgen
  ☆741Updated last week
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆165Updated last year