Alternatives and similar repositories for RFdiffusion2

Users that are interested in RFdiffusion2 are comparing it to the libraries listed below

• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆267Updated last year
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆173Updated 7 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆197Updated 2 months ago
• ikalvet / heme_binder_diffusion
  ☆139Updated 3 months ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆223Updated 2 months ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆331Updated 2 months ago
• yehlincho / BoltzDesign1
  ☆216Updated 2 months ago
• RosettaCommons / RFantibody
  ☆291Updated 3 weeks ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆308Updated 2 weeks ago
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆180Updated last month
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆200Updated 6 months ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆203Updated 8 months ago
• plinder-org / plinder
  Protein Ligand INteraction Dataset and Evaluation Resource
  ☆254Updated 4 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆229Updated 2 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆240Updated this week
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆68Updated 3 weeks ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆270Updated 2 years ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆219Updated last year
• guyujun / pyrosetta-basic
  ☆174Updated 4 years ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆151Updated last week
• BioinfoMachineLearning / PoseBench
  Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)
  ☆170Updated 2 months ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆136Updated 11 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆322Updated 11 months ago
• uw-ipd / RoseTTAFold2
  ☆199Updated 6 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆162Updated last year
• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
  ☆154Updated last week
• ChatMol / ChatMol
  ChatMol
  ☆236Updated 7 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆160Updated last month
• nrbennet / dl_binder_design
  ☆360Updated last year