R package to estimate kinship and FST from SNP data
☆21Jan 27, 2026Updated 2 months ago
Alternatives and similar repositories for popkin
Users that are interested in popkin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Statistical Inference for Unsupervised Learning☆17Updated this week
- logistic factor analysis☆16Jan 29, 2026Updated 2 months ago
- Documents that go into methodological detail regarding various statistical procedures.☆11Oct 20, 2018Updated 7 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 6 years ago
- R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.☆22Jun 21, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Jul 7, 2022Updated 3 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Jan 1, 2020Updated 6 years ago
- Linear Models for Microarray Data☆12Apr 2, 2014Updated 12 years ago
- Multivariate Gaussian Models for Genomic and Pedigree Data☆14May 23, 2020Updated 5 years ago
- A matrix-like wrapper around PLINK .bed files☆19Sep 6, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Fast EM algorithm for a Probabilistic PCA model for Genotype data☆21Jan 14, 2022Updated 4 years ago
- Code and Simulations using Bayesian Approximate Kernel Regression (BAKR)☆11Jan 31, 2019Updated 7 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 11 months ago
- tools to efficiently retrieve and calculate LD☆33Sep 3, 2021Updated 4 years ago
- R package to estimate q-values and false discovery rate quantities.☆121Sep 1, 2023Updated 2 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 4 years ago
- Statistical GENetics Input/Output Functions☆18Feb 20, 2025Updated last year
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Dec 10, 2024Updated last year
- ☆13Aug 18, 2023Updated 2 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 3 weeks ago
- ☆17Feb 27, 2026Updated last month
- A quick reference for how to run many models in R.☆13May 19, 2018Updated 7 years ago
- ☆28Jul 18, 2024Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- Special functions written in Python and accelerated by Numba☆11Apr 22, 2019Updated 6 years ago
- A collection of papers and books that Storey Lab members should read and others may find useful☆48Oct 19, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription☆12Mar 17, 2026Updated 3 weeks ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 6 years ago