mnielLab / netTCRLinks
predicting peptide and TCR interaction
☆20Updated 4 years ago
Alternatives and similar repositories for netTCR
Users that are interested in netTCR are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆69Updated 3 weeks ago
- ☆41Updated 5 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆52Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- ☆38Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆53Updated last year
- ☆49Updated 3 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆60Updated 3 months ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆62Updated 2 weeks ago
- ☆67Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆22Updated 2 weeks ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆50Updated 9 months ago
- PRedictor of IMmunogenic Epitopes☆24Updated 2 months ago
- A guide to running MaxQuant in Linux☆35Updated 5 years ago
- model-based understanding of single-cell CRISPR screening☆26Updated 11 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Parsing tools for GTF (gene transfer format) files☆122Updated 9 months ago
- ☆31Updated 5 months ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Python biomart API☆69Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago