HiSV: a computational pipeline for structural variation detection from Hi-C data
☆18Jun 20, 2025Updated last year
Alternatives and similar repositories for HiSV
Users that are interested in HiSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆63Aug 28, 2025Updated 11 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- ☆13Sep 11, 2025Updated 10 months ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 5 months ago
- Pooled Sequencing Analysis for Sex Signal☆15Sep 14, 2021Updated 4 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 7 months ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- ☆39Aug 14, 2019Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆95Aug 29, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Jan 20, 2026Updated 6 months ago
- ☆32Sep 28, 2019Updated 6 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated 2 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 10 months ago
- Arima Capture HiC pipeline (Arima-CHiC)☆14May 16, 2024Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- ☆21Apr 23, 2024Updated 2 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆22Sep 12, 2023Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 6 years ago
- genomic alignment similarity search tool☆19Jun 26, 2026Updated last month
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year
- ☆22Aug 11, 2020Updated 5 years ago
- ☆15Apr 16, 2026Updated 3 months ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated 2 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 3 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Comparison of Hi-C Experiments using Structural Similarity.☆27Jul 18, 2023Updated 3 years ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆19May 23, 2026Updated 2 months ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 2 months ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago