Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
☆590May 13, 2025Updated 11 months ago
Alternatives and similar repositories for edlib
Users that are interested in edlib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Global alignment and alignment extension☆142Jun 27, 2023Updated 2 years ago
- SIMD partial order alignment tool/library☆177Sep 21, 2025Updated 7 months ago
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 7 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆213Mar 18, 2026Updated last month
- ☆316Jan 15, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆40Jan 12, 2024Updated 2 years ago
- ☆287Dec 29, 2025Updated 4 months ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Pairwise Sequence Alignment Library☆278Aug 27, 2025Updated 8 months ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated last year
- The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.☆450Updated this week
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 2 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆172Mar 10, 2020Updated 6 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated this week
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- alignment to variation graph inducer☆159Apr 11, 2026Updated 3 weeks ago
- Graphical Fragment Assembly (GFA) Format Specification☆219Aug 21, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,164Apr 25, 2026Updated last week
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆137Apr 16, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆477Aug 11, 2025Updated 8 months ago
- Bidirectional WFA (Paper)☆49May 20, 2024Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Long read / genome alignment software☆316Dec 16, 2025Updated 4 months ago
- SeqAn's official repository.☆502Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆196Updated this week
- Fast approximate string searching☆123Apr 11, 2026Updated 3 weeks ago
- Assembled Genomes Compressor☆179Mar 26, 2026Updated last month
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- Find all significant local alignments between reads☆141Jul 3, 2024Updated last year
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago