Alternatives and similar repositories for edlib

Users that are interested in edlib are comparing it to the libraries listed below

• mengyao / Complete-Striped-Smith-Waterman-Library
  ☆311Updated 3 weeks ago
• seqan / seqan
  SeqAn's official repository.
  ☆494Updated last week
• seqan / seqan3
  The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
  ☆435Updated 2 weeks ago
• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆264Updated last year
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆218Updated last year
• samtools / htslib
  C library for high-throughput sequencing data formats
  ☆872Updated last week
• lh3 / cgranges
  A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
  ☆168Updated last year
• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆509Updated last year
• mpetri / FM-Index
  FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…
  ☆107Updated 10 years ago
• lh3 / kmer-cnt
  Code examples of fast and simple k-mer counters for tutorial purposes
  ☆171Updated 5 years ago
• noporpoise / seq-align
  Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
  ☆96Updated 4 years ago
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆39Updated last year
• NVlabs / nvbio
  NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
  ☆219Updated 5 years ago
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆264Updated 3 years ago
• vcflib / vcflib
  C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
  ☆653Updated last month
• smarco / WFA2-lib
  WFA-lib: Wavefront alignment algorithm library v2
  ☆190Updated 3 months ago
• y-256 / libdivsufsort
  A lightweight suffix-sorting library
  ☆388Updated 5 years ago
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆282Updated 10 months ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆172Updated last year
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆479Updated this week
• dnbaker / sketch
  C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
  ☆155Updated last year
• maickrau / GraphAligner
  ☆272Updated last month
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆411Updated 11 months ago
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆223Updated last month
• Piezoid / pugz
  Truly parallel gzip decompression
  ☆125Updated 6 years ago
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆106Updated 11 months ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆134Updated 2 years ago
• nanoporetech / bonito
  A PyTorch Basecaller for Oxford Nanopore Reads
  ☆423Updated 2 months ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆428Updated 3 months ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆200Updated 3 years ago