jeffdaily / parasailLinks
Pairwise Sequence Alignment Library
☆264Updated last month
Alternatives and similar repositories for parasail
Users that are interested in parasail are comparing it to the libraries listed below
Sorting:
- ☆310Updated last month
- Python bindings for the parasail C library.☆109Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- Fast and frugal disk based k-mer counter☆303Updated 2 weeks ago
- A fast multi-threaded k-mer counter☆515Updated last year
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆219Updated 3 weeks ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆170Updated 5 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆277Updated last month
- Sequence-to-graph mapper and graph generator☆456Updated 2 months ago
- Efficient pythonic random access to fasta subsequences☆479Updated last month
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆289Updated 9 months ago
- Fast genome and metagenome distance estimation using MinHash☆420Updated 3 weeks ago
- SIMD partial order alignment tool/library☆170Updated 3 weeks ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆383Updated 3 months ago
- A fast approximate aligner for long DNA sequences☆283Updated last year
- GFF and GTF file manipulation and interconversion☆308Updated last year
- WFA-lib: Wavefront alignment algorithm library v2☆193Updated 5 months ago
- De novo genome assembler for long uncorrected reads☆226Updated last year
- Graphical Fragment Assembly (GFA) Format Specification☆215Updated last year
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆251Updated last month
- Assemble large genomes using short reads☆322Updated 6 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆228Updated 4 months ago
- Global alignment and alignment extension☆136Updated 2 years ago
- Mummer alignment tool☆526Updated 8 months ago
- Simple oligo analysis and primer design☆182Updated last month
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆239Updated last year
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 7 years ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆307Updated 5 months ago
- Next generation sequencing reads de novo assembler.☆237Updated 3 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆440Updated 9 months ago