Pairwise Sequence Alignment Library
☆289Aug 27, 2025Updated last year
Alternatives and similar repositories for parasail
Users that are interested in parasail are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python bindings for the parasail C library.☆118Sep 4, 2024Updated 2 years ago
- ☆323Jan 15, 2026Updated 9 months ago
- Global alignment and alignment extension☆144Jun 27, 2023Updated 3 years ago
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Jul 25, 2016Updated 10 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆231Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SIMD partial order alignment tool/library☆186Oct 15, 2026Updated 2 weeks ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Oct 2, 2026Updated 3 weeks ago
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 8 years ago
- Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.☆612May 13, 2025Updated last year
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆41Jan 12, 2024Updated 2 years ago
- The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.☆465Oct 17, 2026Updated last week
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆148Sep 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆141Jun 23, 2024Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆27Mar 31, 2022Updated 4 years ago
- ☆291Dec 29, 2025Updated 10 months ago
- A versatile toolkit for k-mers with taxonomic information☆84Oct 20, 2026Updated last week
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 6 months ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,261May 19, 2026Updated 5 months ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Dec 9, 2024Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆70Nov 13, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 6 months ago
- Per-base per-nucleotide depth analysis☆153May 9, 2026Updated 5 months ago
- A SIMD-accelerated library to compute random minimizers☆49Updated this week
- A genomic minhashing implementation in Rust☆100Jul 8, 2026Updated 3 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 8 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Mummer alignment tool☆579Feb 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Sep 3, 2026Updated last month
- C/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)☆25Nov 27, 2016Updated 9 years ago
- Fast hash function for DNA/RNA sequences☆111Sep 4, 2026Updated last month
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago