jeffdaily / parasail
Pairwise Sequence Alignment Library
☆254Updated last year
Alternatives and similar repositories for parasail
Users that are interested in parasail are comparing it to the libraries listed below
Sorting:
- ☆312Updated 5 months ago
- Python bindings for the parasail C library.☆100Updated 8 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆320Updated last year
- Fast and frugal disk based k-mer counter☆290Updated 5 months ago
- A fast approximate aligner for long DNA sequences☆281Updated 7 months ago
- Sequence-to-graph mapper and graph generator☆442Updated 11 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- Efficient pythonic random access to fasta subsequences☆468Updated last week
- Mummer alignment tool☆501Updated 3 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆265Updated 4 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆209Updated last year
- Structural variation caller using third generation sequencing☆591Updated 3 weeks ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆283Updated 2 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆337Updated this week
- Code examples of fast and simple k-mer counters for tutorial purposes☆169Updated 5 years ago
- Fast genome and metagenome distance estimation using MinHash☆407Updated last year
- adapter trimmer for Oxford Nanopore reads☆360Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆400Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆501Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆362Updated 3 years ago
- Transcript assembly and quantification for RNA-Seq☆435Updated 2 weeks ago
- Count bases in BAM/CRAM files☆315Updated 3 years ago
- GFF and GTF file manipulation and interconversion☆299Updated last year
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆376Updated last year
- SIMD partial order alignment tool/library☆170Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆402Updated 3 months ago
- A fast multi-threaded k-mer counter☆500Updated last year
- Long read / genome alignment software☆286Updated 6 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆616Updated last month
- BEDOPS: high-performance genomic feature operations☆331Updated last week