Alternatives and similar repositories for kmer-cnt

Users that are interested in kmer-cnt are comparing it to the libraries listed below

• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆170Updated last month
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆131Updated last month
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆284Updated last year
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆181Updated this week
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆198Updated 3 weeks ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆200Updated 3 years ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆130Updated last week
• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆215Updated last year
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆238Updated last year
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆169Updated 11 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆303Updated 11 months ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆138Updated 2 years ago
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆124Updated last year
• marbl / HG002
  A complete diploid human genome
  ☆136Updated last month
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆106Updated last year
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆172Updated last month
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆219Updated last week
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆206Updated last month
• lh3 / yak
  Yet another k-mer analyzer
  ☆149Updated 3 weeks ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆230Updated 4 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆176Updated 4 years ago
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆141Updated last year
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆150Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 8 months ago
• lbcb-sci / raven
  De novo genome assembler for long uncorrected reads
  ☆226Updated last year
• nanoporetech / ont_fast5_api
  Oxford Nanopore Technologies fast5 API software
  ☆154Updated last year
• nanoporetech / taiyaki
  Training models for basecalling Oxford Nanopore reads
  ☆115Updated 3 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 5 months ago