lh3 / kmer-cnt
Code examples of fast and simple k-mer counters for tutorial purposes
☆168Updated 5 years ago
Alternatives and similar repositories for kmer-cnt:
Users that are interested in kmer-cnt are comparing it to the libraries listed below
- SIMD partial order alignment tool/library☆167Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆124Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆226Updated 8 months ago
- A fast approximate aligner for long DNA sequences☆280Updated 6 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆218Updated 2 weeks ago
- Long read / genome alignment software☆284Updated 5 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆209Updated last year
- Assembled Genomes Compressor☆161Updated 4 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆265Updated last month
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated 3 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Fast and frugal disk based k-mer counter☆287Updated 4 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆145Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆128Updated this week
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- ☆268Updated 4 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Pairwise whole genome aligner☆151Updated last week
- a long read simulator that can imitate many types of read problems☆212Updated 8 months ago
- Aligns short reads using dynamic seed size with strobemers☆167Updated last week
- Constructing a pangenome gene graph☆186Updated 2 weeks ago
- BWT construction and search☆112Updated last month
- Global alignment and alignment extension☆131Updated last year
- Graphical Fragment Assembly (GFA) Format Specification☆207Updated 7 months ago
- De novo genome assembler for long uncorrected reads☆215Updated last year
- VGP repository for the genome assembly working group☆191Updated last year
- ☆204Updated 2 months ago
- The ARTIC field bioinformatics pipeline☆122Updated 2 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- Find all significant local alignments between reads☆141Updated 9 months ago