lh3 / kmer-cntLinks
Code examples of fast and simple k-mer counters for tutorial purposes
☆171Updated 5 years ago
Alternatives and similar repositories for kmer-cnt
Users that are interested in kmer-cnt are comparing it to the libraries listed below
Sorting:
- SIMD partial order alignment tool/library☆172Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆131Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆233Updated 11 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆124Updated 2 weeks ago
- Aligns short reads using dynamic seed size with strobemers☆174Updated this week
- Pairwise whole genome aligner☆174Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆193Updated last week
- Global alignment and alignment extension☆133Updated 2 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆213Updated last year
- A fast approximate aligner for long DNA sequences☆282Updated 9 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆225Updated last month
- a long read simulator that can imitate many types of read problems☆228Updated 11 months ago
- Long read / genome alignment software☆291Updated 8 months ago
- Fast and frugal disk based k-mer counter☆294Updated last week
- Assembled Genomes Compressor☆167Updated 7 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆210Updated 10 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆139Updated 2 weeks ago
- A minimap2 frontend for PacBio native data formats☆201Updated 4 months ago
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 4 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆121Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Long read aligner☆115Updated 2 years ago
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- Hierarchical Alignment Format☆170Updated 6 months ago
- ☆270Updated last week
- Structural Variant Identification Method using Long Reads☆172Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year