Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
☆21Dec 24, 2020Updated 5 years ago
Alternatives and similar repositories for hifiasm-meta
Users that are interested in hifiasm-meta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 11 months ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 13, 2026Updated 3 weeks ago
- A compositional bias testing and pruning tool for multiple sequence alignments☆13Jun 16, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆239May 9, 2026Updated 5 months ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Nov 10, 2021Updated 4 years ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated 2 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 4, 2026Updated 2 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Mar 25, 2019Updated 7 years ago
- MGnify API toolkit☆18Oct 29, 2026Updated last week
- ☆11Jul 23, 2024Updated 2 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 6 months ago
- An R package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.☆15Jan 15, 2020Updated 6 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Aug 30, 2022Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 5 months ago
- TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)☆21Oct 9, 2019Updated 7 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Jul 21, 2022Updated 4 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- ☆11Jun 13, 2024Updated 2 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Aug 21, 2020Updated 6 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆205Jul 31, 2026Updated 3 months ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- StrainFinder☆29Jul 8, 2018Updated 8 years ago
- Analyzing sketching and sampling approaches for fast and accurate read classification☆10Aug 30, 2022Updated 4 years ago
- Maturin Starter Project w/PyO3 & Poetry☆13Aug 28, 2022Updated 4 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 2 months ago
- ML approach to discerning "best" Open Reading Frames (ORFs) from "noisy" transcriptomic data. Intended for identification of lineage-spec…☆10Aug 20, 2024Updated 2 years ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆33Aug 8, 2026Updated 2 months ago
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆33Sep 8, 2026Updated last month