lgatto / RforProteomicsLinks
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
☆97Updated 2 months ago
Alternatives and similar repositories for RforProteomics
Users that are interested in RforProteomics are comparing it to the libraries listed below
Sorting:
- R package for analysing proteomics data☆50Updated 2 years ago
- The repo for LFQ-Analyst☆30Updated last year
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated 4 months ago
- Methods for label-free mass spectrometry proteomics☆15Updated 7 months ago
- DEP package☆28Updated 3 years ago
- tidymass☆58Updated last month
- An R interface to enrichR☆93Updated 8 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 weeks ago
- Tools for manipulating annotated data matrices☆92Updated 4 years ago
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26Updated last year
- Proteomics Toolset for Integrative Data Analysis☆26Updated 3 weeks ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆25Updated 4 months ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 6 months ago
- Workflow for single-cell RNA-seq analysis using Seurat☆45Updated last year
- R package - MSstats☆86Updated last week
- R package providing query functionality to BioMart instances like Ensembl☆43Updated this week
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last week
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆29Updated 11 months ago
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆100Updated last month
- An r package for proteomics data Analysis, developed from DEP.☆31Updated 7 months ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated this week
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆48Updated 2 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆74Updated 3 months ago
- ☆18Updated 2 weeks ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 7 months ago