lgatto / RforProteomics
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
☆90Updated last year
Alternatives and similar repositories for RforProteomics:
Users that are interested in RforProteomics are comparing it to the libraries listed below
- R package for analysing proteomics data☆49Updated last year
- R package - MSstats☆75Updated this week
- Methods for label-free mass spectrometry proteomics☆14Updated last year
- The repo for LFQ-Analyst☆29Updated 5 months ago
- DEP package☆28Updated 2 years ago
- Quantitative features for mass spectrometry data☆26Updated last week
- tidymass☆54Updated last year
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆32Updated 3 months ago
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆24Updated last month
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆28Updated 2 months ago
- DEqMS is a tool for quantitative proteomic analysis☆22Updated last month
- An R interface to enrichR☆81Updated last month
- Differential Expression Analysis tool box R lang package for omics data☆42Updated last week
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆18Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 5 months ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆42Updated last week
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆12Updated 2 years ago
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆25Updated 5 months ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆43Updated 3 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆38Updated last month
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆90Updated 2 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆32Updated last week
- Base Classes and Functions for Mass Spectrometry and Proteomics☆128Updated 2 months ago
- Retrieving Information of Proteins from Uniprot☆60Updated 10 months ago
- Tools for manipulating annotated data matrices☆87Updated 3 years ago
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆28Updated last year
- Proteomics Toolset for Integrative Data Analysis☆22Updated last year
- metaX: a flexible and comprehensive software for processing omics data.☆24Updated last year
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago