lgatto / RforProteomics
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
☆94Updated last year
Alternatives and similar repositories for RforProteomics:
Users that are interested in RforProteomics are comparing it to the libraries listed below
- R package for analysing proteomics data☆49Updated 2 years ago
- R package - MSstats☆82Updated this week
- The repo for LFQ-Analyst☆30Updated 8 months ago
- Methods for label-free mass spectrometry proteomics☆15Updated last month
- Quantitative features for mass spectrometry data☆27Updated last month
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated 3 months ago
- tidymass☆54Updated last year
- DEP package☆28Updated 2 years ago
- Differential Expression Analysis tool box R lang package for omics data☆44Updated last month
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆44Updated 3 months ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆45Updated 2 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 2 months ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆44Updated 3 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 2 months ago
- An r package for proteomics data Analysis, developed from DEP.☆29Updated last month
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated last month
- Data Mining and Analysis of Lipidomics datasets in R☆30Updated last year
- Base Classes and Functions for Mass Spectrometry and Proteomics☆132Updated 3 weeks ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆119Updated 4 years ago
- An R interface to enrichR☆92Updated 3 months ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆20Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆12Updated 2 years ago
- Proteomics Toolset for Integrative Data Analysis☆22Updated 3 weeks ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 weeks ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆27Updated last year
- Robust statistical inference for quantitative LC-MS proteomics☆33Updated 2 years ago
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆94Updated 5 months ago
- Reduce + Visualize Gene Ontology☆27Updated last week