CompOmics / compomics-utilitiesLinks
Open source Java library for computational proteomics
☆34Updated last month
Alternatives and similar repositories for compomics-utilities
Users that are interested in compomics-utilities are comparing it to the libraries listed below
Sorting:
- Interpretation of proteomics identification results☆50Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated last week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- Computational analysis for mass spectrometry-based proteomics data☆20Updated 3 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆42Updated 2 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆80Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆223Updated last week
- Mass spectrometry data visualization☆36Updated 4 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆21Updated last month
- PDV: an integrative proteomics data viewer☆55Updated 2 months ago
- Highly adaptable common interface for proteomics search and de novo engines☆45Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 2 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆134Updated 2 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated 3 weeks ago
- A cross-platform proteomics data analysis suite☆250Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated 3 weeks ago
- Instrument Application Programming Interface☆50Updated 7 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- MZmine 2 source code repository☆133Updated last year
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 3 years ago
- MSDK source code repository☆40Updated 2 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Updated 3 years ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Updated 2 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 3 months ago
- ☆13Updated last year
- ☆55Updated 4 years ago