Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
☆32Oct 5, 2022Updated 3 years ago
Alternatives and similar repositories for Informed-Proteomics
Users that are interested in Informed-Proteomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.☆20Oct 23, 2025Updated 9 months ago
- Library for mass spectrometry projects☆28Updated this week
- Universal Deconvolution of Mass and Ion Mobility Spectra☆87Jun 26, 2026Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 3 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆12Jan 14, 2023Updated 3 years ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆110Updated this week
- Thermo MSFileReader Python bindings☆71May 4, 2021Updated 5 years ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Updated this week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- C# Mass Spectrometry Library☆41Jun 14, 2022Updated 4 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- Morpheus mass spectrometry–based proteomics database search algorithm☆21Jul 25, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Software tool for identifying lipids in LC-MS/MS-based lipidomics data☆23Apr 13, 2022Updated 4 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated last month
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆191Apr 19, 2024Updated 2 years ago
- PIA - Protein Inference Algorithms☆25Jul 15, 2026Updated last week
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆13Aug 26, 2022Updated 3 years ago
- ☆41Mar 16, 2026Updated 4 months ago
- C++ lossless and lossy mass spectrometry compression☆15Sep 16, 2021Updated 4 years ago
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆19Sep 7, 2023Updated 2 years ago
- Repository for mzIdentML and the corresponding examples☆27May 6, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MSDK source code repository☆41Sep 22, 2022Updated 3 years ago
- HUPO-PSI mass spectrometry CV☆42Jul 13, 2026Updated last week
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- ☆38Jul 5, 2026Updated 3 weeks ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated 11 months ago
- ☆34Jul 16, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Libraries for fine isotopic structure calculator.☆43Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆71Jan 6, 2026Updated 6 months ago
- PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics☆16Aug 11, 2022Updated 3 years ago
- Instrument Application Programming Interface☆57May 11, 2026Updated 2 months ago
- Deep learning framework for proteomics☆156Updated this week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Jul 2, 2026Updated 3 weeks ago
- Spectral library searching using approximate nearest neighbor techniques.☆50Feb 11, 2026Updated 5 months ago