Alternatives and similar repositories for Informed-Proteomics

Users that are interested in Informed-Proteomics are comparing it to the libraries listed below

• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆22Updated 2 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated 2 weeks ago
• MannLabs / timsrust
  ☆28Updated 4 months ago
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 4 years ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆65Updated 2 years ago
• HUPO-PSI / psi-ms-CV
  HUPO-PSI mass spectrometry CV
  ☆37Updated 2 weeks ago
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆42Updated last week
• chhh / batmass
  Mass spectrometry data visualization
  ☆37Updated 4 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆54Updated last week
• dbaileychess / CSMSL
  C# Mass Spectrometry Library
  ☆38Updated 3 years ago
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 weeks ago
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆20Updated 4 months ago
• gtluu / timsconvert
  ☆41Updated 7 months ago
• msdk / msdk
  MSDK source code repository
  ☆40Updated 3 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆48Updated 7 months ago
• smith-chem-wisc / MetaMorpheus
  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
  ☆102Updated last week
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆48Updated this week
• fickludd / dinosaur
  Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
  ☆45Updated 3 years ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• mobiusklein / ms_deisotope
  A library for deisotoping and charge state deconvolution of complex mass spectra
  ☆41Updated 2 months ago
• thermofisherlsms / RawFileReader
  ☆63Updated 7 months ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• smith-chem-wisc / mzLib
  Library for mass spectrometry projects
  ☆26Updated this week
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 4 years ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated 7 months ago
• HUPO-PSI / mzTab
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆43Updated 6 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 4 months ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆28Updated 3 weeks ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆81Updated last year