jessegmeyerlab / proteomics-tutorial
☆56Updated 9 months ago
Alternatives and similar repositories for proteomics-tutorial:
Users that are interested in proteomics-tutorial are comparing it to the libraries listed below
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆35Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 4 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- A Python interface to proteomics data repositories☆32Updated 9 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 2 months ago
- Python package for investigating the structural context of PTMs☆28Updated last month
- PDV: an integrative proteomics data viewer☆45Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆78Updated 10 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆32Updated 4 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆79Updated this week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Differential Expression Analysis tool box R lang package for omics data☆42Updated last week
- asari, metabolomics data preprocessing☆44Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 2 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated this week
- A library for QC report based on MultiQC framework☆14Updated 3 months ago
- ☆28Updated 6 months ago
- ☆13Updated 11 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆44Updated this week
- Quantitative proteomics workflow☆15Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆28Updated 3 months ago
- Absolute quantification package based on quantms.io☆13Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆26Updated last month
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 3 months ago
- ☆16Updated this week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated last month
- A Comet-based, best practices proteomics pipeline.☆35Updated 11 months ago