mbhall88 / fast5seek
Subset of fast5 files contained in a fastq, BAM, or SAM file.
☆12Updated last year
Alternatives and similar repositories for fast5seek:
Users that are interested in fast5seek are comparing it to the libraries listed below
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 6 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆47Updated 4 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Real-time species-typing visualisation for nanopore data.☆13Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆34Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- ☆26Updated 5 years ago
- crab go snap snap☆35Updated this week
- catalog for long-read sequencing tools☆32Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 3 months ago
- ☆47Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 2 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆25Updated 3 months ago
- ☆21Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago