Alternatives and similar repositories for clustree

Users that are interested in clustree are comparing it to the libraries listed below

• egeulgen / pathfindR
  pathfindR: Enrichment Analysis Utilizing Active Subnetworks
  ☆195Updated 2 months ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆160Updated last month
• iSEE / iSEE
  R/shiny interface for interactive visualization of data in SummarizedExperiment objects
  ☆228Updated 3 weeks ago
• raivokolde / pheatmap
  Pretty heatmaps
  ☆265Updated 6 months ago
• tidyomics / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆175Updated last month
• willtownes / glmpca
  ☆95Updated last year
• renozao / NMF
  NMF: A Flexible R package for Nonnegative Matrix Factorization
  ☆153Updated 2 years ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆144Updated 8 months ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆67Updated 3 weeks ago
• bigomics / omicsplayground
  Visual self-service analytics platform for big omics data.
  ☆128Updated last week
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆110Updated last year
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆84Updated 4 months ago
• Bioconductor / BiocStickers
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.
  ☆136Updated 2 weeks ago
• VPetukhov / ggrastr
  Raster geoms for ggplot2
  ☆231Updated 2 years ago
• PhanstielLab / plotgardener
  ☆338Updated 7 months ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆82Updated last year
• const-ae / glmGamPoi
  Fit Gamma-Poisson Generalized Linear Models Reliably
  ☆118Updated 8 months ago
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆111Updated 2 months ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last year
• RGLab / flowWorkspace
  flowWorkspace
  ☆45Updated 9 months ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆79Updated 2 weeks ago
• SaskiaFreytag / schex
  ☆74Updated last year
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆84Updated last month
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆279Updated 2 weeks ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated 2 weeks ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆74Updated 3 weeks ago
• svalvaro / drawCell
  R package to create cell pictures.
  ☆134Updated 3 years ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆70Updated 3 weeks ago
• stephenslab / susieR
  R package for "sum of single effects" regression.
  ☆238Updated last week
• hawn-lab / workshops_UW_Seattle
  ☆26Updated 4 years ago