Visualise Clusterings at Different Resolutions
☆257Jun 21, 2025Updated 11 months ago
Alternatives and similar repositories for clustree
Users that are interested in clustree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to infer biological activities from omics data using a collection of methods.☆294Dec 16, 2025Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆433May 11, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆474Mar 13, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆251Updated this week
- A Toolbox for Spatial Transcriptomics Analysis☆168May 6, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- R client for the OmniPath web service☆165Apr 29, 2026Updated 3 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆335Apr 23, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆787Jan 6, 2024Updated 2 years ago
- Fast Wilcoxon and auROC☆210May 5, 2026Updated 3 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆114Feb 6, 2026Updated 3 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 10 months ago
- Easy single cell analysis platform for enrichment☆225Apr 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- ☆452May 5, 2026Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last month
- Interpretation of cell states using reference single-cell maps☆319Dec 19, 2025Updated 5 months ago
- Cell type prioritization in single-cell data☆141Mar 26, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 3 months ago
- ☆76Feb 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆300May 11, 2026Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆458Jan 22, 2026Updated 4 months ago
- Community-provided extensions to Seurat☆363Feb 17, 2026Updated 3 months ago
- R toolkit for single cell genomics☆2,731Updated this week
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Gene set variation analysis☆242May 19, 2026Updated last week
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-sample multi-group scRNA-seq analysis tools☆229Apr 28, 2026Updated 3 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆650May 12, 2026Updated 2 weeks ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated last month
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆155Aug 3, 2025Updated 9 months ago
- BANKSY: spatial clustering☆147Updated this week
- Spatial omics analysis toolbox☆374Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆646Nov 12, 2025Updated 6 months ago