Visualise Clusterings at Different Resolutions
☆260Jun 21, 2025Updated last year
Alternatives and similar repositories for clustree
Users that are interested in clustree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to infer biological activities from omics data using a collection of methods.☆304Dec 16, 2025Updated 8 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- High dimensional weighted gene co-expression network analysis☆492Jun 16, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆263Updated this week
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package for detecting doublets in single-cell RNA sequencing data☆562Mar 21, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- R client for the OmniPath web service☆173Aug 3, 2026Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆347Apr 23, 2024Updated 2 years ago
- Fast Wilcoxon and auROC☆216Aug 26, 2026Updated last week
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 6 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆311Jun 17, 2025Updated last year
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Aug 22, 2026Updated 2 weeks ago
- Easy single cell analysis platform for enrichment☆231Aug 9, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 8 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- ☆467May 26, 2026Updated 3 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- Cell type prioritization in single-cell data☆148Mar 26, 2026Updated 5 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆342Nov 1, 2022Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆76Feb 4, 2024Updated 2 years ago
- Community-provided extensions to Seurat☆371Jun 29, 2026Updated 2 months ago
- R toolkit for single cell genomics☆2,793Aug 28, 2026Updated last week
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated last month
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆127Apr 16, 2025Updated last year
- Gene set variation analysis☆247Aug 4, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆482Jan 22, 2026Updated 7 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆215Jan 9, 2023Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 4 months ago
- Spatial omics analysis toolbox☆388Updated this week
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆184Jan 8, 2026Updated 7 months ago
- BANKSY: spatial clustering☆159May 30, 2026Updated 3 months ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 6 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated last year