Alternatives and similar repositories for clustree

Users that are interested in clustree are comparing it to the libraries listed below

• egeulgen / pathfindR
  pathfindR: Enrichment Analysis Utilizing Active Subnetworks
  ☆193Updated this week
• iSEE / iSEE
  R/shiny interface for interactive visualization of data in SummarizedExperiment objects
  ☆228Updated 2 months ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆159Updated last week
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆173Updated last week
• raivokolde / pheatmap
  Pretty heatmaps
  ☆265Updated 3 months ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆141Updated 5 months ago
• bigomics / omicsplayground
  Visual self-service analytics platform for big omics data.
  ☆125Updated this week
• VPetukhov / ggrastr
  Raster geoms for ggplot2
  ☆225Updated 2 years ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆67Updated last week
• PhanstielLab / plotgardener
  ☆333Updated 5 months ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆82Updated 2 months ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆138Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆66Updated last month
• willtownes / glmpca
  ☆95Updated last year
• const-ae / glmGamPoi
  Fit Gamma-Poisson Generalized Linear Models Reliably
  ☆115Updated 6 months ago
• Bioconductor / BiocStickers
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.
  ☆130Updated this week
• renozao / NMF
  NMF: A Flexible R package for Nonnegative Matrix Factorization
  ☆151Updated 2 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated 2 months ago
• hawn-lab / workshops_UW_Seattle
  ☆26Updated 4 years ago
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆108Updated last year
• jminnier / STARTapp
  The START App: R Shiny Transcriptome Analysis Resource Tool
  ☆89Updated 4 years ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆80Updated last year
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆68Updated last week
• SaskiaFreytag / schex
  ☆74Updated last year
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆265Updated 6 months ago
• stephenslab / susieR
  R package for "sum of single effects" regression.
  ☆221Updated last week
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆97Updated 6 months ago
• davetang / romim
  R package for querying the OMIM database
  ☆17Updated last week
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆69Updated 2 months ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆154Updated last month