sfu-compbio / PhISCS
Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data
☆11Updated 4 years ago
Alternatives and similar repositories for PhISCS:
Users that are interested in PhISCS are comparing it to the libraries listed below
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 9 months ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆9Updated 2 months ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆34Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- ☆17Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆15Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated this week
- Single Cell Analysis Automated Workflow☆27Updated last year
- ☆10Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated 3 weeks ago
- RNA editing tests☆16Updated 4 years ago
- Cellsnake tool main repo☆34Updated 11 months ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- ☆18Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated this week
- RNA-seq workflow: differential transcript usage☆20Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Micro DNA identification☆22Updated 3 years ago
- ☆37Updated 4 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated this week