sfu-compbio / PhISCSLinks
Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data
☆11Updated 4 years ago
Alternatives and similar repositories for PhISCS
Users that are interested in PhISCS are comparing it to the libraries listed below
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆9Updated last month
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- ☆18Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- ☆38Updated 5 years ago
- IDR☆31Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆13Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Micro DNA identification☆24Updated 3 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆40Updated 7 months ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- Cellsnake tool main repo☆33Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago