sfu-compbio / PhISCS
Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data
☆11Updated 4 years ago
Alternatives and similar repositories for PhISCS:
Users that are interested in PhISCS are comparing it to the libraries listed below
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆9Updated this week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆34Updated 4 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated 3 weeks ago
- ☆18Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆40Updated last week
- Annotation and segmentation of MAS-seq data☆20Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated 3 weeks ago
- ☆23Updated 3 years ago
- Comprehensive and scalable differential splicing analyses☆16Updated last month
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 10 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆43Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆11Updated 4 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆18Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 weeks ago
- Micro DNA identification☆22Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- SingleCell Nanopore sequencing data analysis☆57Updated 3 months ago
- ☆28Updated 4 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- ☆17Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- ☆47Updated 8 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago