KChen-lab / MonoVarLinks
Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data
☆14Updated 5 years ago
Alternatives and similar repositories for MonoVar
Users that are interested in MonoVar are comparing it to the libraries listed below
Sorting:
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last week
- An R package to time somatic mutations☆62Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- ☆47Updated 6 months ago
- ☆40Updated 7 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Cellsnake tool main repo☆33Updated last year
- ☆49Updated 11 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- ☆38Updated 5 years ago
- ☆74Updated 3 months ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- ☆17Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆34Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- ☆44Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago